{"id":"https://openalex.org/W4391021982","doi":"https://doi.org/10.1109/cdc49753.2023.10383825","title":"Modelling Pathogen Response of the Human Immune System in a Reduced State Space","display_name":"Modelling Pathogen Response of the Human Immune System in a Reduced State Space","publication_year":2023,"publication_date":"2023-12-13","ids":{"openalex":"https://openalex.org/W4391021982","doi":"https://doi.org/10.1109/cdc49753.2023.10383825"},"language":"en","primary_location":{"id":"doi:10.1109/cdc49753.2023.10383825","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/cdc49753.2023.10383825","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 62nd IEEE Conference on Decision and Control (CDC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-325660","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074233611","display_name":"Pouria Tajvar","orcid":"https://orcid.org/0000-0001-9516-6764"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Pouria Tajvar","raw_affiliation_strings":["KTH Royal Institute of Technology,Division of Decision and Control Systems (DCS)","Division of Decision and Control Systems (DCS), KTH Royal Institute of Technology"],"affiliations":[{"raw_affiliation_string":"KTH Royal Institute of Technology,Division of Decision and Control Systems (DCS)","institution_ids":["https://openalex.org/I86987016"]},{"raw_affiliation_string":"Division of Decision and Control Systems (DCS), KTH Royal Institute of Technology","institution_ids":["https://openalex.org/I86987016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092383403","display_name":"Rikard Forlin","orcid":"https://orcid.org/0009-0004-2194-4788"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Rikard Forlin","raw_affiliation_strings":["Karolinska Institutet,Department of Women&#x0027;s and Children&#x0027;s Health"],"affiliations":[{"raw_affiliation_string":"Karolinska Institutet,Department of Women&#x0027;s and Children&#x0027;s Health","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076200740","display_name":"Petter Brodin","orcid":"https://orcid.org/0000-0002-8103-0046"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Petter Brodin","raw_affiliation_strings":["Karolinska Institutet,Department of Women&#x0027;s and Children&#x0027;s Health"],"affiliations":[{"raw_affiliation_string":"Karolinska Institutet,Department of Women&#x0027;s and Children&#x0027;s Health","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055348953","display_name":"Dimos V. Dimarogonas","orcid":"https://orcid.org/0000-0001-7309-8086"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Dimos V. Dimarogonas","raw_affiliation_strings":["KTH Royal Institute of Technology,Division of Decision and Control Systems (DCS)","Division of Decision and Control Systems (DCS), KTH Royal Institute of Technology"],"affiliations":[{"raw_affiliation_string":"KTH Royal Institute of Technology,Division of Decision and Control Systems (DCS)","institution_ids":["https://openalex.org/I86987016"]},{"raw_affiliation_string":"Division of Decision and Control Systems (DCS), KTH Royal Institute of Technology","institution_ids":["https://openalex.org/I86987016"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5074233611"],"corresponding_institution_ids":["https://openalex.org/I86987016"],"apc_list":null,"apc_paid":null,"fwci":0.153,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.61099557,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"46","issue":null,"first_page":"715","last_page":"720"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4675523042678833},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4564192295074463},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.452062726020813},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4363842010498047},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39161133766174316},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3531438708305359},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3212019205093384},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20953145623207092}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4675523042678833},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4564192295074463},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.452062726020813},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4363842010498047},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39161133766174316},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3531438708305359},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3212019205093384},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20953145623207092},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cdc49753.2023.10383825","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/cdc49753.2023.10383825","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 62nd IEEE Conference on Decision and Control (CDC)","raw_type":"proceedings-article"},{"id":"pmh:oai:DiVA.org:kth-325660","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-325660","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:DiVA.org:kth-325660","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-325660","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W193824047","https://openalex.org/W1837170756","https://openalex.org/W2061442098","https://openalex.org/W2065833295","https://openalex.org/W2070494252","https://openalex.org/W2082290707","https://openalex.org/W2126345910","https://openalex.org/W2139417466","https://openalex.org/W2140154342","https://openalex.org/W2143426320","https://openalex.org/W2292417525","https://openalex.org/W2303714942","https://openalex.org/W2336576680","https://openalex.org/W2409401342","https://openalex.org/W2436013910","https://openalex.org/W2560758606","https://openalex.org/W2735983558","https://openalex.org/W2752822875","https://openalex.org/W2786938712","https://openalex.org/W2887015436","https://openalex.org/W2954716046","https://openalex.org/W2964145209","https://openalex.org/W2977406646","https://openalex.org/W2990534302","https://openalex.org/W3086251959","https://openalex.org/W3099810371","https://openalex.org/W3200044004","https://openalex.org/W4282024710","https://openalex.org/W4292261510","https://openalex.org/W4309533920","https://openalex.org/W4315471767","https://openalex.org/W4315488639","https://openalex.org/W4315620354","https://openalex.org/W4319977964","https://openalex.org/W4376612852","https://openalex.org/W6637572315"],"related_works":["https://openalex.org/W2380784125","https://openalex.org/W3004057759","https://openalex.org/W2889085215","https://openalex.org/W2914806737","https://openalex.org/W2998216295","https://openalex.org/W33196642","https://openalex.org/W2611743072","https://openalex.org/W2131250617","https://openalex.org/W3204182506","https://openalex.org/W3188962172"],"abstract_inverted_index":{"The":[0],"immune":[1],"system":[2],"response":[3,145],"to":[4,83],"pathogens":[5],"is":[6,44,94],"organized":[7],"by":[8,104],"a":[9,17,45,59,95,114],"network":[10],"of":[11,16,19,27,41,107,113,134],"cells":[12],"communicating":[13,34],"through":[14],"expression":[15,52,65,85],"variety":[18],"proteins":[20],"and":[21,87,137],"signaling":[22],"molecules.":[23],"A":[24],"high":[25],"number":[26,40],"genes":[28],"are":[29],"involved":[30],"in":[31,48,143,149],"encoding":[32],"these":[33],"agents,":[35],"but":[36],"the":[37,50,68,76,105,120,126,150,156],"relatively":[38,96],"low":[39],"data":[42],"points":[43],"major":[46],"challenge":[47],"modelling":[49],"gene":[51,64,100],"response.":[53],"In":[54],"this":[55],"work":[56],"we":[57],"propose":[58,125],"feature-selection":[60],"approach":[61],"based":[62,118],"on":[63,119],"distributions":[66],"at":[67,75],"single-cell":[69],"level":[70],"that":[71,89,139],"improves":[72],"dynamics":[73],"identification":[74],"population":[77],"level.":[78],"We":[79,123],"investigate":[80],"common":[81],"approaches":[82],"differential":[84],"analysis":[86],"show":[88,138],"Earth":[90],"Mover's":[91],"Distance":[92],"(EMD)":[93],"robust":[97],"measure":[98],"for":[99],"selection":[101],"as":[102,109,111,131],"reflected":[103],"coefficient":[106],"variation":[108],"well":[110],"accuracy":[112],"naive":[115],"Bayes":[116],"classifier":[117],"selected":[121,157],"genes.":[122,158],"ultimately":[124],"bootstrap":[127],"standard":[128],"deviation":[129],"metric":[130],"an":[132],"estimate":[133],"state":[135,152],"uncertainty":[136],"statistically":[140],"significant":[141],"signals":[142],"pathogen":[144],"can":[146],"be":[147],"recovered":[148],"reduced":[151],"space":[153],"constructed":[154],"with":[155]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
