{"id":"https://openalex.org/W2947655929","doi":"https://doi.org/10.1109/cdc40024.2019.9029917","title":"Optimal reporter placement in sparsely measured genetic networks using the Koopman operator","display_name":"Optimal reporter placement in sparsely measured genetic networks using the Koopman operator","publication_year":2019,"publication_date":"2019-12-01","ids":{"openalex":"https://openalex.org/W2947655929","doi":"https://doi.org/10.1109/cdc40024.2019.9029917","mag":"2947655929"},"language":"en","primary_location":{"id":"doi:10.1109/cdc40024.2019.9029917","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc40024.2019.9029917","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE 58th Conference on Decision and Control (CDC)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1906.00944","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053016610","display_name":"Aqib Hasnain","orcid":"https://orcid.org/0000-0002-2057-7953"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Aqib Hasnain","raw_affiliation_strings":["Department of Mechanical Engineering, University of California, Santa Barbara","University of California Santa Barbara"],"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, University of California, Santa Barbara","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"University of California Santa Barbara","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090227921","display_name":"Nibodh Boddupalli","orcid":"https://orcid.org/0000-0002-6306-0946"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nibodh Boddupalli","raw_affiliation_strings":["Department of Mechanical Engineering, University of California, Santa Barbara","University of California Santa Barbara"],"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, University of California, Santa Barbara","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"University of California Santa Barbara","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091530669","display_name":"Enoch Yeung","orcid":"https://orcid.org/0000-0001-7630-7429"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Enoch Yeung","raw_affiliation_strings":["Department of Mechanical Engineering, University of California, Santa Barbara","University of California Santa Barbara"],"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, University of California, Santa Barbara","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"University of California Santa Barbara","institution_ids":["https://openalex.org/I154570441"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5053016610"],"corresponding_institution_ids":["https://openalex.org/I154570441"],"apc_list":null,"apc_paid":null,"fwci":0.7356,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.6970946,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"19","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11206","display_name":"Model Reduction and Neural Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11206","display_name":"Model Reduction and Neural Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12814","display_name":"Gaussian Processes and Bayesian Inference","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10928","display_name":"Probabilistic and Robust Engineering Design","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/observability","display_name":"Observability","score":0.8910670876502991},{"id":"https://openalex.org/keywords/operator","display_name":"Operator (biology)","score":0.6837753057479858},{"id":"https://openalex.org/keywords/observable","display_name":"Observable","score":0.5769239664077759},{"id":"https://openalex.org/keywords/nonlinear-system","display_name":"Nonlinear system","score":0.5295292735099792},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.511765718460083},{"id":"https://openalex.org/keywords/dynamical-systems-theory","display_name":"Dynamical systems theory","score":0.4840668737888336},{"id":"https://openalex.org/keywords/dynamical-system","display_name":"Dynamical system (definition)","score":0.47397154569625854},{"id":"https://openalex.org/keywords/control-theory","display_name":"Control theory (sociology)","score":0.3641495704650879},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.354885995388031},{"id":"https://openalex.org/keywords/applied-mathematics","display_name":"Applied mathematics","score":0.18218201398849487},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.129908949136734},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08762475848197937}],"concepts":[{"id":"https://openalex.org/C36299963","wikidata":"https://www.wikidata.org/wiki/Q1369844","display_name":"Observability","level":2,"score":0.8910670876502991},{"id":"https://openalex.org/C17020691","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operator (biology)","level":5,"score":0.6837753057479858},{"id":"https://openalex.org/C32848918","wikidata":"https://www.wikidata.org/wiki/Q845789","display_name":"Observable","level":2,"score":0.5769239664077759},{"id":"https://openalex.org/C158622935","wikidata":"https://www.wikidata.org/wiki/Q660848","display_name":"Nonlinear system","level":2,"score":0.5295292735099792},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.511765718460083},{"id":"https://openalex.org/C79379906","wikidata":"https://www.wikidata.org/wiki/Q3174497","display_name":"Dynamical systems theory","level":2,"score":0.4840668737888336},{"id":"https://openalex.org/C33962884","wikidata":"https://www.wikidata.org/wiki/Q378637","display_name":"Dynamical system (definition)","level":3,"score":0.47397154569625854},{"id":"https://openalex.org/C47446073","wikidata":"https://www.wikidata.org/wiki/Q5165890","display_name":"Control theory (sociology)","level":3,"score":0.3641495704650879},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.354885995388031},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.18218201398849487},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.129908949136734},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08762475848197937},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.0},{"id":"https://openalex.org/C158448853","wikidata":"https://www.wikidata.org/wiki/Q425218","display_name":"Repressor","level":4,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/cdc40024.2019.9029917","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc40024.2019.9029917","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE 58th Conference on Decision and Control (CDC)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1906.00944","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1906.00944","pdf_url":"https://arxiv.org/pdf/1906.00944","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:2947655929","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/1906.00944.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1906.00944","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1906.00944","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1906.00944","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1906.00944","pdf_url":"https://arxiv.org/pdf/1906.00944","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320338294","display_name":"Air Force Research Laboratory","ror":"https://ror.org/02e2egq70"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2947655929.pdf","grobid_xml":"https://content.openalex.org/works/W2947655929.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1591018827","https://openalex.org/W1723433682","https://openalex.org/W1997054581","https://openalex.org/W2000189075","https://openalex.org/W2004207982","https://openalex.org/W2060496070","https://openalex.org/W2063018656","https://openalex.org/W2065393215","https://openalex.org/W2075273870","https://openalex.org/W2076580309","https://openalex.org/W2108493072","https://openalex.org/W2131824593","https://openalex.org/W2156675727","https://openalex.org/W2164954534","https://openalex.org/W2169207653","https://openalex.org/W2266932692","https://openalex.org/W2296319761","https://openalex.org/W2311231005","https://openalex.org/W2561027863","https://openalex.org/W2566199617","https://openalex.org/W2735197468","https://openalex.org/W2737353822","https://openalex.org/W2746363015","https://openalex.org/W2777417212","https://openalex.org/W2796669415","https://openalex.org/W2898350739","https://openalex.org/W2907600550","https://openalex.org/W2909116885","https://openalex.org/W2963198642","https://openalex.org/W2963882206","https://openalex.org/W2972885302","https://openalex.org/W3101360817","https://openalex.org/W3104009841","https://openalex.org/W4240998965","https://openalex.org/W4250589301","https://openalex.org/W6679608865","https://openalex.org/W6743094116","https://openalex.org/W6749583154","https://openalex.org/W6756019701","https://openalex.org/W6757621756","https://openalex.org/W6948260645"],"related_works":["https://openalex.org/W3133874090","https://openalex.org/W2977194766","https://openalex.org/W3036818215","https://openalex.org/W1559297268","https://openalex.org/W2938256654","https://openalex.org/W3003974660","https://openalex.org/W2534427316","https://openalex.org/W2527093507","https://openalex.org/W2117567237","https://openalex.org/W2596830659","https://openalex.org/W2246190661","https://openalex.org/W2096847218","https://openalex.org/W2552598774","https://openalex.org/W2914506601","https://openalex.org/W2886702833","https://openalex.org/W3008006006","https://openalex.org/W2023061932","https://openalex.org/W3011808167","https://openalex.org/W2510087581","https://openalex.org/W1997831742"],"abstract_inverted_index":{"Optimal":[0],"sensor":[1,51],"placement":[2,54,148],"is":[3,17,73,140],"an":[4,47,96],"important":[5],"yet":[6],"unsolved":[7],"problem":[8],"in":[9,111,117],"control":[10],"theory.":[11],"In":[12],"biological":[13],"organisms,":[14],"genetic":[15],"activity":[16],"often":[18,114],"highly":[19],"nonlinear,":[20],"making":[21],"it":[22],"difficult":[23],"to":[24,29,45,61,76,95,153],"design":[25,66],"libraries":[26],"of":[27,33,40,65,67,86,99,138,149,157,169],"promoters":[28],"act":[30],"as":[31],"reporters":[32],"the":[34,41,63,68,77,80,84,93,125,131,136,143,155,158,163],"cell":[35],"state.":[36],"We":[37,161],"make":[38],"use":[39],"Koopman":[42,81,102,128,134],"observability":[43,156],"gramian":[44],"develop":[46],"algorithm":[48,164],"for":[49,55],"optimal":[50,147],"(or":[52],"reporter)":[53],"discrete":[56],"time":[57],"nonlinear":[58,88],"dynamical":[59],"systems":[60],"ease":[62,72],"difficulty":[64],"promoter":[69],"library.":[70],"This":[71],"enabled":[74],"due":[75],"fact":[78],"that":[79],"operator":[82,129],"represents":[83],"evolution":[85],"a":[87,166,170],"system":[89],"linearly":[90],"by":[91],"lifting":[92],"states":[94],"infinite-dimensional":[97],"space":[98],"observables.":[100],"The":[101,146],"framework":[103],"ideally":[104],"demands":[105],"high":[106],"temporal":[107],"resolution,":[108],"but":[109],"data":[110],"biology":[112],"are":[113],"sampled":[115],"sparsely":[116],"time.":[118],"Therefore":[119],"we":[120,123],"compute":[121],"what":[122],"call":[124],"temporally":[126,132],"fine-grained":[127,159],"from":[130,142],"coarse-grained":[133],"operator,":[135],"latter":[137],"which":[139],"identified":[141],"sparse":[144],"data.":[145],"sensors":[150],"then":[151],"corresponds":[152],"maximizing":[154],"system.":[160],"demonstrate":[162],"on":[165],"simulation":[167],"example":[168],"circadian":[171],"oscillator.":[172]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
