{"id":"https://openalex.org/W2570425724","doi":"https://doi.org/10.1109/cdc.2016.7798360","title":"In-vivo identification and control of aerotaxis in Bacillus subtilis","display_name":"In-vivo identification and control of aerotaxis in Bacillus subtilis","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2570425724","doi":"https://doi.org/10.1109/cdc.2016.7798360","mag":"2570425724"},"language":"en","primary_location":{"id":"doi:10.1109/cdc.2016.7798360","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc.2016.7798360","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 55th Conference on Decision and Control (CDC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083704013","display_name":"Filippo Menolascina","orcid":"https://orcid.org/0000-0002-4937-7912"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Filippo Menolascina","raw_affiliation_strings":["Institute for Bioengineering, University of Edinburgh, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioengineering, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018606584","display_name":"Roman Stocker","orcid":"https://orcid.org/0000-0002-3199-0508"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Roman Stocker","raw_affiliation_strings":["Department of Civil, Environmental and Geomatic Engineering ETH Zurich, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Civil, Environmental and Geomatic Engineering ETH Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068753451","display_name":"Eduardo D. Sontag","orcid":"https://orcid.org/0000-0001-8020-5783"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eduardo D. Sontag","raw_affiliation_strings":["Mathematics Department, Rutgers University, Piscataway, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mathematics Department, Rutgers University, Piscataway, NJ, USA","institution_ids":["https://openalex.org/I102322142"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5489,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.66354752,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"152","issue":null,"first_page":"764","last_page":"769"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11255","display_name":"Microfluidic and Bio-sensing Technologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11255","display_name":"Microfluidic and Bio-sensing Technologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10412","display_name":"Microfluidic and Capillary Electrophoresis Applications","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bacillus-subtilis","display_name":"Bacillus subtilis","score":0.8059114217758179},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5032538771629333},{"id":"https://openalex.org/keywords/in-vivo","display_name":"In vivo","score":0.47524213790893555},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.47297540307044983},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.45063820481300354},{"id":"https://openalex.org/keywords/microfluidics","display_name":"Microfluidics","score":0.4295712113380432},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33989566564559937},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3066902756690979},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.2881675362586975},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.2285204827785492},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.15247830748558044},{"id":"https://openalex.org/keywords/biotechnology","display_name":"Biotechnology","score":0.09644657373428345},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08801278471946716},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08092692494392395}],"concepts":[{"id":"https://openalex.org/C2777272437","wikidata":"https://www.wikidata.org/wiki/Q131238","display_name":"Bacillus subtilis","level":3,"score":0.8059114217758179},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5032538771629333},{"id":"https://openalex.org/C207001950","wikidata":"https://www.wikidata.org/wiki/Q141124","display_name":"In vivo","level":2,"score":0.47524213790893555},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.47297540307044983},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.45063820481300354},{"id":"https://openalex.org/C8673954","wikidata":"https://www.wikidata.org/wiki/Q138845","display_name":"Microfluidics","level":2,"score":0.4295712113380432},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33989566564559937},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3066902756690979},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.2881675362586975},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.2285204827785492},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.15247830748558044},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.09644657373428345},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08801278471946716},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08092692494392395},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cdc.2016.7798360","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc.2016.7798360","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 55th Conference on Decision and Control (CDC)","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.ed.ac.uk:publications/9e1d83c6-fead-438d-ad28-7c77a2f1680c","is_oa":false,"landing_page_url":"http://hdl.handle.net/20.500.11820/9e1d83c6-fead-438d-ad28-7c77a2f1680c","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W58805225","https://openalex.org/W1503248986","https://openalex.org/W1541518484","https://openalex.org/W1761206762","https://openalex.org/W1994794118","https://openalex.org/W2004118592","https://openalex.org/W2006929737","https://openalex.org/W2037666623","https://openalex.org/W2057013484","https://openalex.org/W2068367947","https://openalex.org/W2070715293","https://openalex.org/W2094052071","https://openalex.org/W2106411386","https://openalex.org/W2333660537","https://openalex.org/W3038615359","https://openalex.org/W4238036509","https://openalex.org/W6631054933"],"related_works":["https://openalex.org/W4293061103","https://openalex.org/W3041516390","https://openalex.org/W1548672655","https://openalex.org/W3025683560","https://openalex.org/W2301778769","https://openalex.org/W4238511776","https://openalex.org/W2359352982","https://openalex.org/W2758340467","https://openalex.org/W2354946010","https://openalex.org/W2382107673"],"abstract_inverted_index":{"Problems":[0],"of":[1,5,14,38,51,79,81,83,92,111,128,135,138,140,167],"identification":[2,104],"and":[3,73,116,151],"control":[4,37,153,160],"biological":[6],"systems":[7],"have":[8],"recently":[9],"attracted":[10,70],"an":[11,172],"increasing":[12],"amount":[13],"attention.":[15],"Most":[16],"work":[17],"in":[18,95,113,122,171],"this":[19,31,84,120],"field":[20],"has":[21],"classically":[22],"focused":[23],"either":[24],"on":[25,35],"gene":[26],"or":[27],"protein":[28],"networks.":[29],"In":[30],"manuscript,":[32],"we":[33,61,74,106,117],"focus":[34],"the":[36,48,77,126,136,141,149,152,165,168],"a":[39,44,63,96,108],"behavioral":[40],"trait":[41],"emerging":[42],"from":[43],"signaling":[45],"network:":[46],"aerotaxis,":[47],"directed":[49],"motion":[50],"bacteria":[52],"towards":[53],"(or":[54],"away":[55],"from)":[56],"oxygen.":[57],"To":[58],"do":[59],"so,":[60],"consider":[62],"bacterium,":[64],"Bacillus":[65],"subtilis,":[66,115],"which":[67],"is":[68],"strongly":[69],"by":[71,155],"oxygen,":[72],"quantitatively":[75],"probe":[76],"dynamics":[78],"accumulation":[80],"populations":[82],"microorganism":[85],"when":[86],"exposed":[87],"to":[88,124,132],"tightly":[89],"controlled":[90],"gradients":[91,130],"oxygen":[93,129],"generated":[94],"microfluidic":[97],"device.":[98],"Combining":[99],"in-vivo":[100,158],"experiments":[101],"with":[102],"system":[103],"methods,":[105],"determine":[107],"simple":[109],"model":[110,121,150],"aerotaxis":[112],"B.":[114],"subsequently":[118],"employ":[119],"order":[123],"compute":[125],"sequence":[127],"needed":[131],"achieve":[133],"regulation":[134],"center":[137],"mass":[139],"bacterial":[142],"population.":[143],"We":[144],"then":[145],"successfully":[146],"validate":[147],"both":[148],"scheme,":[154],"showing":[156],"that":[157],"positioning":[159],"can":[161],"be":[162],"achieved":[163],"via":[164],"application":[166],"precomputed":[169],"inputs":[170],"open-loop":[173],"configuration.":[174]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
