{"id":"https://openalex.org/W2289427331","doi":"https://doi.org/10.1109/cdc.2015.7402597","title":"Retrieving common dynamics of gene regulatory networks under various perturbations","display_name":"Retrieving common dynamics of gene regulatory networks under various perturbations","publication_year":2015,"publication_date":"2015-12-01","ids":{"openalex":"https://openalex.org/W2289427331","doi":"https://doi.org/10.1109/cdc.2015.7402597","mag":"2289427331"},"language":"en","primary_location":{"id":"doi:10.1109/cdc.2015.7402597","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc.2015.7402597","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 54th IEEE Conference on Decision and Control (CDC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003286550","display_name":"Young Hwan Chang","orcid":"https://orcid.org/0000-0001-8764-1959"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Young Hwan Chang","raw_affiliation_strings":["Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070294446","display_name":"Roel Dobbe","orcid":"https://orcid.org/0000-0003-4633-7023"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roel Dobbe","raw_affiliation_strings":["University of California Berkeley, Berkeley, CA, US"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California Berkeley, Berkeley, CA, US","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024461060","display_name":"Palak Bhushan","orcid":"https://orcid.org/0000-0001-7473-382X"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Palak Bhushan","raw_affiliation_strings":["Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028899187","display_name":"Joe W. Gray","orcid":"https://orcid.org/0000-0001-9225-6756"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joe W. Gray","raw_affiliation_strings":["Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045155646","display_name":"Claire J. Tomlin","orcid":"https://orcid.org/0000-0003-3192-3185"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Claire J. Tomlin","raw_affiliation_strings":["Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.3538,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.88870217,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"2531","last_page":"2536"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5935634970664978},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.5050275921821594},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4948224425315857},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.43292689323425293},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3776848018169403},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2615244686603546},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.258260041475296},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.14530465006828308},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09848091006278992}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5935634970664978},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.5050275921821594},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4948224425315857},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.43292689323425293},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3776848018169403},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2615244686603546},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.258260041475296},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.14530465006828308},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09848091006278992},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cdc.2015.7402597","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc.2015.7402597","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 54th IEEE Conference on Decision and Control (CDC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1893022572","https://openalex.org/W1921958996","https://openalex.org/W1966641487","https://openalex.org/W1978282180","https://openalex.org/W2002085380","https://openalex.org/W2019655981","https://openalex.org/W2023348596","https://openalex.org/W2034459017","https://openalex.org/W2048116035","https://openalex.org/W2094140481","https://openalex.org/W2096678291","https://openalex.org/W2110070747","https://openalex.org/W2119980081","https://openalex.org/W2137414835","https://openalex.org/W2147755534","https://openalex.org/W2147901574","https://openalex.org/W2157121418","https://openalex.org/W2163296727","https://openalex.org/W2166106382"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"Recently,":[0],"with":[1],"the":[2,52,66,83,90,107],"growth":[3],"of":[4,54,85,106],"high-throughput":[5],"proteomic":[6],"data,":[7],"in":[8,61,117],"particular":[9],"time":[10],"series":[11],"gene":[12,41],"expression":[13],"data":[14],"from":[15,30],"various":[16,111],"perturbations,":[17,86],"a":[18,71],"general":[19],"question":[20],"that":[21],"has":[22],"arisen":[23],"is":[24,35],"how":[25,39],"to":[26,51,77,82,110],"extract":[27],"meaningful":[28],"structure":[29,93],"inherently":[31],"heterogeneous":[32],"data.":[33],"Little":[34],"known":[36],"about":[37],"exactly":[38],"these":[40],"regulatory":[42],"networks":[43],"(GRNs)":[44],"operate":[45],"under":[46],"different":[47],"stimuli.":[48],"Challenges":[49],"due":[50,81],"lack":[53],"knowledge":[55],"may":[56],"cause":[57],"bias":[58,79],"or":[59,64],"uncertainty":[60],"identifying":[62],"parameters":[63],"inferring":[65],"GRN":[67,108],"structure.":[68],"We":[69],"propose":[70],"new":[72],"algorithm":[73],"which":[74],"enables":[75],"us":[76],"estimate":[78],"error":[80],"effect":[84],"and":[87],"correctly":[88],"identify":[89],"common":[91,104],"graph":[92,97],"among":[94],"biased":[95],"inferred":[96],"structures.":[98],"To":[99],"do":[100],"this,":[101],"we":[102],"retrieve":[103],"dynamics":[105],"subject":[109],"perturbations":[112],"inspired":[113],"by":[114],"\u201cimage":[115],"repairing\u201d":[116],"computer":[118],"vision":[119],"[1].":[120]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
