{"id":"https://openalex.org/W2144713972","doi":"https://doi.org/10.1109/cdc.2007.4434801","title":"Towards a mechanistic view of protein motion","display_name":"Towards a mechanistic view of protein motion","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W2144713972","doi":"https://doi.org/10.1109/cdc.2007.4434801","mag":"2144713972"},"language":"en","primary_location":{"id":"doi:10.1109/cdc.2007.4434801","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc.2007.4434801","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 46th IEEE Conference on Decision and Control","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046109728","display_name":"Filip Jagodzinski","orcid":"https://orcid.org/0000-0001-7783-2241"},"institutions":[{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Filip Jagodzinski","raw_affiliation_strings":["Robotics and Biology Laboratory, Computational Biology Laboratory, Department of Computer Science, University of Massachusetts, Amherst, Amherst, MA, USA","Massachusetts Univ., Amherst"],"affiliations":[{"raw_affiliation_string":"Robotics and Biology Laboratory, Computational Biology Laboratory, Department of Computer Science, University of Massachusetts, Amherst, Amherst, MA, USA","institution_ids":["https://openalex.org/I24603500"]},{"raw_affiliation_string":"Massachusetts Univ., Amherst","institution_ids":["https://openalex.org/I24603500"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039143538","display_name":"Oliver Brock","orcid":"https://orcid.org/0000-0002-3719-7754"},"institutions":[{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oliver Brock","raw_affiliation_strings":["Robotics and Biology Laboratory, Computational Biology Laboratory, Department of Computer Science, University of Massachusetts, Amherst, Amherst, MA, USA","Massachusetts Univ., Amherst"],"affiliations":[{"raw_affiliation_string":"Robotics and Biology Laboratory, Computational Biology Laboratory, Department of Computer Science, University of Massachusetts, Amherst, Amherst, MA, USA","institution_ids":["https://openalex.org/I24603500"]},{"raw_affiliation_string":"Massachusetts Univ., Amherst","institution_ids":["https://openalex.org/I24603500"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5046109728"],"corresponding_institution_ids":["https://openalex.org/I24603500"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.21082886,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"3","issue":null,"first_page":"4557","last_page":"4562"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10923","display_name":"Force Microscopy Techniques and Applications","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10923","display_name":"Force Microscopy Techniques and Applications","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9717000126838684,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10653","display_name":"Robot Manipulation and Learning","score":0.963100016117096,"subfield":{"id":"https://openalex.org/subfields/2207","display_name":"Control and Systems Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kinematics","display_name":"Kinematics","score":0.8121002912521362},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7176996469497681},{"id":"https://openalex.org/keywords/motion","display_name":"Motion (physics)","score":0.6426582932472229},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5900377631187439},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4950841963291168},{"id":"https://openalex.org/keywords/robotics","display_name":"Robotics","score":0.4596630334854126},{"id":"https://openalex.org/keywords/robot","display_name":"Robot","score":0.3917674422264099},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3462662398815155},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09872937202453613},{"id":"https://openalex.org/keywords/classical-mechanics","display_name":"Classical mechanics","score":0.07270476222038269}],"concepts":[{"id":"https://openalex.org/C39920418","wikidata":"https://www.wikidata.org/wiki/Q11476","display_name":"Kinematics","level":2,"score":0.8121002912521362},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7176996469497681},{"id":"https://openalex.org/C104114177","wikidata":"https://www.wikidata.org/wiki/Q79782","display_name":"Motion (physics)","level":2,"score":0.6426582932472229},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5900377631187439},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4950841963291168},{"id":"https://openalex.org/C34413123","wikidata":"https://www.wikidata.org/wiki/Q170978","display_name":"Robotics","level":3,"score":0.4596630334854126},{"id":"https://openalex.org/C90509273","wikidata":"https://www.wikidata.org/wiki/Q11012","display_name":"Robot","level":2,"score":0.3917674422264099},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3462662398815155},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09872937202453613},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.07270476222038269},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1109/cdc.2007.4434801","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc.2007.4434801","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 46th IEEE Conference on Decision and Control","raw_type":"proceedings-article"},{"id":"pmh:oai:scholarworks.umass.edu:cs_faculty_pubs-1393","is_oa":false,"landing_page_url":"https://scholarworks.umass.edu/cs_faculty_pubs/394","pdf_url":null,"source":{"id":"https://openalex.org/S4306402240","display_name":"ScholarWorks@UMassAmherst (University of Massachusetts Amherst)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I24603500","host_organization_name":"University of Massachusetts Amherst","host_organization_lineage":["https://openalex.org/I24603500"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computer Science Department Faculty Publication Series","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.121.268","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.121.268","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://robotics.cs.umass.edu/uploads/Main/cdc_mechanistic_finalSub_Jagodzinski.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.134.9103","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.134.9103","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www-robotics.cs.umass.edu/~oli/publications/src/2007-cdc.pdf","raw_type":"text"},{"id":"pmh:oai:scholarworks.umass.edu:20.500.14394/10054","is_oa":false,"landing_page_url":"https://hdl.handle.net/20.500.14394/10054","pdf_url":null,"source":{"id":"https://openalex.org/S4306402240","display_name":"ScholarWorks@UMassAmherst (University of Massachusetts Amherst)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I24603500","host_organization_name":"University of Massachusetts Amherst","host_organization_lineage":["https://openalex.org/I24603500"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"published","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1491063910","https://openalex.org/W1906034729","https://openalex.org/W1978123766","https://openalex.org/W1983066351","https://openalex.org/W2003106667","https://openalex.org/W2006709300","https://openalex.org/W2007130448","https://openalex.org/W2019476648","https://openalex.org/W2064053868","https://openalex.org/W2067484689","https://openalex.org/W2087295915","https://openalex.org/W2093547815","https://openalex.org/W2097433753","https://openalex.org/W2112474089","https://openalex.org/W2113994268","https://openalex.org/W2122326469","https://openalex.org/W2125556468","https://openalex.org/W2126162505","https://openalex.org/W2139425469","https://openalex.org/W2166149166","https://openalex.org/W2397877732","https://openalex.org/W2403902171","https://openalex.org/W2405882864","https://openalex.org/W2907227701","https://openalex.org/W4253973328","https://openalex.org/W6650720869"],"related_works":["https://openalex.org/W2789522126","https://openalex.org/W2066693961","https://openalex.org/W2368363778","https://openalex.org/W122584421","https://openalex.org/W4244295168","https://openalex.org/W2753351751","https://openalex.org/W3185180338","https://openalex.org/W2889348933","https://openalex.org/W2351643838","https://openalex.org/W3033677963"],"abstract_inverted_index":{"Proteins":[0],"are":[1],"the":[2,30,56,60,85,95,99,117,146,162],"fundamental":[3],"building":[4],"blocks":[5],"of":[6,32,55,59,84,87,101,105,120,164],"all":[7],"biological":[8],"systems.":[9],"To":[10],"perform":[11],"their":[12,23],"function,":[13,47],"proteins":[14],"generally":[15],"undergo":[16],"self-motions":[17,58,86],"that":[18,78,116],"result":[19],"in":[20,22],"changes":[21],"three-dimensional":[24],"shape.":[25],"In":[26,71,103],"order":[27],"to":[28,37,40,43,51,149],"understand":[29],"function":[31],"a":[33,88,110,121,151,155],"protein":[34,89,122,165],"and":[35,80,112,138,158],"thus":[36],"be":[38,65,91,124,150],"able":[39],"infer":[41],"how":[42],"therapeutically":[44],"regulate":[45],"its":[46],"it":[48],"is":[49],"necessary":[50],"have":[52],"detailed":[53],"knowledge":[54,63],"feasible":[57],"protein.":[61],"Such":[62],"cannot":[64],"obtained":[66],"by":[67,93],"existing":[68],"experimental":[69],"methods.":[70],"this":[72,106],"paper,":[73],"we":[74,108],"present":[75,109],"preliminary":[76],"evidence":[77],"accurate":[79],"computationally":[81],"efficient":[82,159],"simulation":[83,96,114,163],"may":[90],"achieved":[92],"partitioning":[94],"based":[97,126],"on":[98,128],"type":[100],"self-motions.":[102],"support":[104],"view,":[107],"method":[111,133,148,160],"accompanying":[113],"results":[115],"large-scale":[118],"motions":[119],"can":[123],"simulated":[125],"entirely":[127],"kinematic":[129],"considerations.":[130],"The":[131],"proposed":[132,147],"leverages":[134],"insights":[135],"from":[136,142],"kinematics":[137],"operational":[139],"space":[140],"control":[141],"robotics.":[143],"We":[144],"believe":[145],"first":[152],"step":[153],"towards":[154],"general,":[156],"accurate,":[157],"for":[161],"motion.":[166]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
