{"id":"https://openalex.org/W2017806279","doi":"https://doi.org/10.1109/ccgrid.2005.1558597","title":"HGBS: a hardware-oriented grid BLAST system","display_name":"HGBS: a hardware-oriented grid BLAST system","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2017806279","doi":"https://doi.org/10.1109/ccgrid.2005.1558597","mag":"2017806279"},"language":"en","primary_location":{"id":"doi:10.1109/ccgrid.2005.1558597","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ccgrid.2005.1558597","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005.","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100657823","display_name":"Tae-Kyung Kim","orcid":"https://orcid.org/0000-0001-5089-2914"},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Tae-Kyung Kim","raw_affiliation_strings":["Department of Industrial Information Engineering, Chungbuk National University, Cheongju, South Korea","Dept. of Ind. Inf. Eng., Chungbuk Nat. Univ., Cheong-ju, South Korea#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Industrial Information Engineering, Chungbuk National University, Cheongju, South Korea","institution_ids":["https://openalex.org/I163753206"]},{"raw_affiliation_string":"Dept. of Ind. Inf. Eng., Chungbuk Nat. Univ., Cheong-ju, South Korea#TAB#","institution_ids":["https://openalex.org/I163753206"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040025135","display_name":"Sang\u2010Keun Oh","orcid":"https://orcid.org/0000-0002-6538-9200"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sang-Keun Oh","raw_affiliation_strings":["Hansol Network Consulting Cooperation, Cheongju, South Korea","Ulster University, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hansol Network Consulting Cooperation, Cheongju, South Korea","institution_ids":[]},{"raw_affiliation_string":"Ulster University, Ireland","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100773242","display_name":"Kyung-Hee Lee","orcid":"https://orcid.org/0000-0001-5110-123X"},"institutions":[{"id":"https://openalex.org/I3133433985","display_name":"Seowon University","ror":"https://ror.org/00ncqx842","country_code":"KR","type":"education","lineage":["https://openalex.org/I3133433985"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES","KR"],"is_corresponding":false,"raw_author_name":"Kyung-Hee Lee","raw_affiliation_strings":["School of Computer, Information & Communication Engineering, Seowon University, Cheongju, South Korea","Univ. Politecnica de Valencia, Spain#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Information & Communication Engineering, Seowon University, Cheongju, South Korea","institution_ids":["https://openalex.org/I3133433985"]},{"raw_affiliation_string":"Univ. Politecnica de Valencia, Spain#TAB#","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014602654","display_name":"Dong\u2010Hyun Roh","orcid":"https://orcid.org/0000-0003-4383-2598"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Dong-Hyun Roh","raw_affiliation_strings":["Division of Life Sciences, Chungbuk National University, Cheongju, South Korea","Math. & Comput. Sci. Div., Argonne Nat. Lab., IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Life Sciences, Chungbuk National University, Cheongju, South Korea","institution_ids":["https://openalex.org/I163753206"]},{"raw_affiliation_string":"Math. & Comput. Sci. Div., Argonne Nat. Lab., IL, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059129511","display_name":"Wan-Sup Cho","orcid":"https://orcid.org/0000-0002-4395-1979"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Wan-Sup Cho","raw_affiliation_strings":["Department of Management Information System, Chungbuk National University, Cheongju, South Korea","Math. & Comput. Sci. Div., Argonne Nat. Lab., IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Management Information System, Chungbuk National University, Cheongju, South Korea","institution_ids":["https://openalex.org/I163753206"]},{"raw_affiliation_string":"Math. & Comput. Sci. Div., Argonne Nat. Lab., IL, USA","institution_ids":["https://openalex.org/I1282105669"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.3923,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.58605787,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"520","last_page":"526 Vol. 1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7766172885894775},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.6520259380340576},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.5520371794700623},{"id":"https://openalex.org/keywords/extensibility","display_name":"Extensibility","score":0.5337190628051758},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.4994237422943115},{"id":"https://openalex.org/keywords/middleware","display_name":"Middleware (distributed applications)","score":0.4795353412628174},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.45816829800605774},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.22869792580604553},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10684046149253845}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7766172885894775},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.6520259380340576},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.5520371794700623},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.5337190628051758},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.4994237422943115},{"id":"https://openalex.org/C169468491","wikidata":"https://www.wikidata.org/wiki/Q146923","display_name":"Middleware (distributed applications)","level":2,"score":0.4795353412628174},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.45816829800605774},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.22869792580604553},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10684046149253845},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ccgrid.2005.1558597","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ccgrid.2005.1558597","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W170980215","https://openalex.org/W1659313070","https://openalex.org/W1887210150","https://openalex.org/W1993158258","https://openalex.org/W2001592646","https://openalex.org/W2055043387","https://openalex.org/W2111996486","https://openalex.org/W2122289960","https://openalex.org/W2123604711","https://openalex.org/W2124957199","https://openalex.org/W2133790733","https://openalex.org/W2154010459","https://openalex.org/W2158714788","https://openalex.org/W2221295424","https://openalex.org/W2257585000","https://openalex.org/W4236236547","https://openalex.org/W6639314884","https://openalex.org/W6678522320","https://openalex.org/W6678928254","https://openalex.org/W6688851540","https://openalex.org/W6692353773"],"related_works":["https://openalex.org/W1824707887","https://openalex.org/W2068583628","https://openalex.org/W169905258","https://openalex.org/W1570043218","https://openalex.org/W2131162066","https://openalex.org/W2142152636","https://openalex.org/W2162974494","https://openalex.org/W2162684709","https://openalex.org/W2115770466","https://openalex.org/W3146449452"],"abstract_inverted_index":{"BLAST":[0,35,64,70,125],"is":[1,42,114],"one":[2],"of":[3,50,124],"the":[4,18,34,48,69,74,96,141],"most":[5],"widely":[6],"used":[7],"tools":[8],"in":[9,33,119,127],"bio":[10],"informatics":[11],"to":[12,55,99,139],"find":[13],"biologically":[14],"similar":[15,39],"sequences":[16,54],"from":[17],"genome":[19,51],"databases":[20,52],"for":[21,121],"a":[22,80,86,91,115,137,144],"given":[23],"query":[24],"sequence.":[25],"Although":[26],"elaborate":[27],"dynamic":[28],"programming":[29],"and":[30,53,105],"heuristic":[31],"search":[32],"rapidly":[36],"identify":[37],"significant":[38,116],"sequences,":[40],"performance":[41,71,117],"still":[43],"an":[44],"important":[45],"issue":[46],"as":[47,95],"size":[49],"be":[56],"compared":[57],"increases.":[58],"We":[59],"propose":[60],"HGBS":[61,78,131],"(hardware-oriented":[62],"grid":[63,75,82,92],"system)":[65],"that":[66,112],"significantly":[67],"improves":[68],"by":[72,85],"applying":[73],"computing":[76],"technique.":[77],"utilizes":[79],"PC-based":[81],"environment":[83],"constructed":[84],"specialized":[87],"hardware":[88],"chip,":[89],"not":[90],"middleware":[93],"such":[94],"Globus":[97],"toolkit,":[98],"provide":[100],"enhanced":[101],"performance,":[102],"good":[103],"extensibility,":[104],"lower":[106],"implementation":[107],"cost.":[108],"Performance":[109],"analysis":[110],"shows":[111],"there":[113],"advantage":[118],"HGBS;":[120],"huge":[122],"number":[123],"operations":[126],"89-prokaryote":[128],"genomes":[129],"comparison,":[130],"connecting":[132],"27":[133],"PCs":[134],"needs":[135],"just":[136],"week":[138],"complete":[140],"comparisons,":[142],"but":[143],"single":[145],"server":[146],"system":[147],"takes":[148],"about":[149],"33":[150],"weeks.":[151]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
