{"id":"https://openalex.org/W2059085521","doi":"https://doi.org/10.1109/ccgrid.2005.1558594","title":"Grid warehousing of molecular dynamics protein unfolding data","display_name":"Grid warehousing of molecular dynamics protein unfolding data","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2059085521","doi":"https://doi.org/10.1109/ccgrid.2005.1558594","mag":"2059085521"},"language":"en","primary_location":{"id":"doi:10.1109/ccgrid.2005.1558594","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ccgrid.2005.1558594","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085158698","display_name":"Frederic Stahl","orcid":"https://orcid.org/0000-0002-4860-0203"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]},{"id":"https://openalex.org/I309496635","display_name":"Weihenstephan-Triesdorf University of Applied Sciences","ror":"https://ror.org/00gzkxz88","country_code":"DE","type":"education","lineage":["https://openalex.org/I309496635"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"F. Stahl","raw_affiliation_strings":["School of Biomedical Sciences, University of Ulster, Coleraine, UK","Weihenstephen University of Applied Sciences, Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Sciences, University of Ulster, Coleraine, UK","institution_ids":["https://openalex.org/I138801177"]},{"raw_affiliation_string":"Weihenstephen University of Applied Sciences, Freising, Germany","institution_ids":["https://openalex.org/I309496635"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091132218","display_name":"Daniel Berrar","orcid":"https://orcid.org/0000-0002-7038-2601"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"D. Berrar","raw_affiliation_strings":["School of Biomedical Sciences, University of Ulster, Coleraine, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Sciences, University of Ulster, Coleraine, UK","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005828840","display_name":"C\u00e2ndida G. Silva","orcid":"https://orcid.org/0000-0002-7092-1169"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"C. Silva","raw_affiliation_strings":["Departamento de Qu\u00edmica, Faculdade de Ci\u00eancias e Tecnologia and Centro de Neurosci\u00eancias de Coimbra, Universidade de Coimbra Polo II, Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Qu\u00edmica, Faculdade de Ci\u00eancias e Tecnologia and Centro de Neurosci\u00eancias de Coimbra, Universidade de Coimbra Polo II, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053730956","display_name":"Joaquim Rui Rodrigues","orcid":"https://orcid.org/0000-0002-9756-1124"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"R.J. Rodrigues","raw_affiliation_strings":["Departamento de Qu\u00edmica, Faculdade de Ci\u00eancias e Tecnologia and Centro de Neurosci\u00eancias de Coimbra, Universidade de Coimbra Polo II, Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Qu\u00edmica, Faculdade de Ci\u00eancias e Tecnologia and Centro de Neurosci\u00eancias de Coimbra, Universidade de Coimbra Polo II, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088910380","display_name":"Rui M. M. Brito","orcid":"https://orcid.org/0000-0001-9128-2557"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"R.M.M. Brito","raw_affiliation_strings":["Departamento de Qu\u00edmica, Faculdade de Ci\u00eancias e Tecnologia and Centro de Neurosci\u00eancias de Coimbra, Universidade de Coimbra Polo II, Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Qu\u00edmica, Faculdade de Ci\u00eancias e Tecnologia and Centro de Neurosci\u00eancias de Coimbra, Universidade de Coimbra Polo II, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011609464","display_name":"Werner Dubitzky","orcid":null},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"W. Dubitzky","raw_affiliation_strings":["School of Biomedical Sciences, University of Ulster, Coleraine, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Sciences, University of Ulster, Coleraine, UK","institution_ids":["https://openalex.org/I138801177"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5056,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.63405427,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"52","issue":null,"first_page":"496","last_page":"503 Vol. 1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.975600004196167,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.975600004196167,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9542999863624573,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7252668142318726},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.6937732696533203},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5535144805908203},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.5501459836959839},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.5369709730148315},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.5216672420501709},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3550967276096344},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.32500526309013367},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13692983984947205},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12216916680335999}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7252668142318726},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.6937732696533203},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5535144805908203},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.5501459836959839},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5369709730148315},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.5216672420501709},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3550967276096344},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.32500526309013367},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13692983984947205},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12216916680335999},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/ccgrid.2005.1558594","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ccgrid.2005.1558594","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005.","raw_type":"proceedings-article"},{"id":"pmh:oai:centaur.reading.ac.uk:30147","is_oa":false,"landing_page_url":"https://centaur.reading.ac.uk/30147/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402273","display_name":"CentAUR (University of Reading)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71052956","host_organization_name":"University of Reading","host_organization_lineage":["https://openalex.org/I71052956"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book or Report Section"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.46000000834465027}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1969554454","https://openalex.org/W1994157101","https://openalex.org/W2020165513","https://openalex.org/W2031092627","https://openalex.org/W2083416535","https://openalex.org/W2103815459","https://openalex.org/W2134797513","https://openalex.org/W2147396853","https://openalex.org/W2158530066","https://openalex.org/W2319660501"],"related_works":["https://openalex.org/W1993039745","https://openalex.org/W2260493136","https://openalex.org/W1581129489","https://openalex.org/W2113188411","https://openalex.org/W2369252416","https://openalex.org/W2976965029","https://openalex.org/W2382178265","https://openalex.org/W2055827177","https://openalex.org/W2072666835","https://openalex.org/W4248706500"],"abstract_inverted_index":{"With":[0],"the":[1,8,14,45,96,107,114,120,162,169,174],"increasing":[2],"awareness":[3],"of":[4,10,49,83,99,123,173],"protein":[5,21,23,52,143,157],"folding":[6,24,46],"disorders,":[7],"explosion":[9],"genomic":[11],"information,":[12],"and":[13,25,47,58,73,79,91,105,119,141,164,171],"need":[15,126],"for":[16,156],"efficient":[17],"ways":[18,60],"to":[19,43,61,103,111,127,132,139,150],"predict":[20],"structure,":[22],"unfolding":[26,48,53,144,158],"has":[27],"become":[28],"a":[29,65,81,134,152],"central":[30],"issue":[31,67],"in":[32,89,168],"molecular":[33],"sciences":[34],"research.":[35],"Molecular":[36],"dynamics":[37],"computer":[38],"simulations":[39,54,78],"are":[40],"increasingly":[41],"employed":[42],"understand":[44],"proteins.":[50],"Running":[51],"is":[55,64,130],"computationally":[56],"expensive":[57],"finding":[59],"enhance":[62],"performance":[63],"grid":[66],"on":[68],"its":[69],"own.":[70],"However,":[71],"more":[72,74],"groups":[75],"run":[76],"such":[77],"generate":[80,112],"myriad":[82],"data,":[84,113],"which":[85],"raises":[86],"new":[87],"challenges":[88],"managing":[90],"analyzing":[92],"these":[93],"data.":[94,145,159],"Because":[95],"vast":[97],"range":[98],"proteins":[100],"researchers":[101,138],"want":[102],"study":[104],"simulate,":[106],"computational":[108],"effort":[109],"needed":[110],"large":[115],"data":[116,154,175],"volumes":[117],"involved,":[118],"different":[121],"types":[122],"analyses":[124],"scientists":[125],"perform,":[128],"it":[129],"desirable":[131],"provide":[133,151],"public":[135],"repository":[136],"allowing":[137],"pool":[140],"share":[142],"This":[146],"paper":[147],"describes":[148],"efforts":[149],"grid-enabled":[153],"warehouse":[155],"We":[160],"outline":[161],"challenge":[163],"present":[165],"first":[166],"results":[167],"design":[170],"implementation":[172],"warehouse.":[176]},"counts_by_year":[{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
