{"id":"https://openalex.org/W3209745336","doi":"https://doi.org/10.1109/ccece53047.2021.9569202","title":"Predicting Physiological Effects of Chemical Substances Using Natural Language Processing","display_name":"Predicting Physiological Effects of Chemical Substances Using Natural Language Processing","publication_year":2021,"publication_date":"2021-09-12","ids":{"openalex":"https://openalex.org/W3209745336","doi":"https://doi.org/10.1109/ccece53047.2021.9569202","mag":"3209745336"},"language":"en","primary_location":{"id":"doi:10.1109/ccece53047.2021.9569202","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ccece53047.2021.9569202","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE Canadian Conference on Electrical and Computer Engineering (CCECE)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086404791","display_name":"Sourav Mukherjee","orcid":"https://orcid.org/0000-0002-9370-0596"},"institutions":[{"id":"https://openalex.org/I4210140396","display_name":"Becton Dickinson (Canada)","ror":"https://ror.org/031dsww89","country_code":"CA","type":"company","lineage":["https://openalex.org/I146461966","https://openalex.org/I4210140396"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Sourav Mukherjee","raw_affiliation_strings":["Fairleigh Dickinson University,Vancouver,Canada","Fairleigh Dickinson University, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"Fairleigh Dickinson University,Vancouver,Canada","institution_ids":["https://openalex.org/I4210140396"]},{"raw_affiliation_string":"Fairleigh Dickinson University, Vancouver, Canada","institution_ids":["https://openalex.org/I4210140396"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073101730","display_name":"JJ Ben-Joseph","orcid":null},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"JJ Ben-Joseph","raw_affiliation_strings":["University of Maryland Baltimore County,Maryland,USA","University of Maryland Baltimore County, Maryland, USA"],"affiliations":[{"raw_affiliation_string":"University of Maryland Baltimore County,Maryland,USA","institution_ids":["https://openalex.org/I79272384"]},{"raw_affiliation_string":"University of Maryland Baltimore County, Maryland, USA","institution_ids":["https://openalex.org/I79272384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109327314","display_name":"Marcelo Campos","orcid":null},"institutions":[{"id":"https://openalex.org/I4210140396","display_name":"Becton Dickinson (Canada)","ror":"https://ror.org/031dsww89","country_code":"CA","type":"company","lineage":["https://openalex.org/I146461966","https://openalex.org/I4210140396"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Marcelo Campos","raw_affiliation_strings":["Fairleigh Dickinson University,Vancouver,Canada","Fairleigh Dickinson University, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"Fairleigh Dickinson University,Vancouver,Canada","institution_ids":["https://openalex.org/I4210140396"]},{"raw_affiliation_string":"Fairleigh Dickinson University, Vancouver, Canada","institution_ids":["https://openalex.org/I4210140396"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049749865","display_name":"Prashan Malla","orcid":null},"institutions":[{"id":"https://openalex.org/I4210140396","display_name":"Becton Dickinson (Canada)","ror":"https://ror.org/031dsww89","country_code":"CA","type":"company","lineage":["https://openalex.org/I146461966","https://openalex.org/I4210140396"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Prashan Malla","raw_affiliation_strings":["Fairleigh Dickinson University,Vancouver,Canada","Fairleigh Dickinson University, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"Fairleigh Dickinson University,Vancouver,Canada","institution_ids":["https://openalex.org/I4210140396"]},{"raw_affiliation_string":"Fairleigh Dickinson University, Vancouver, Canada","institution_ids":["https://openalex.org/I4210140396"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101560395","display_name":"Hieu Nguyen","orcid":"https://orcid.org/0000-0002-8349-5445"},"institutions":[{"id":"https://openalex.org/I4210140396","display_name":"Becton Dickinson (Canada)","ror":"https://ror.org/031dsww89","country_code":"CA","type":"company","lineage":["https://openalex.org/I146461966","https://openalex.org/I4210140396"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Hieu Nguyen","raw_affiliation_strings":["Fairleigh Dickinson University,Vancouver,Canada","Fairleigh Dickinson University, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"Fairleigh Dickinson University,Vancouver,Canada","institution_ids":["https://openalex.org/I4210140396"]},{"raw_affiliation_string":"Fairleigh Dickinson University, Vancouver, Canada","institution_ids":["https://openalex.org/I4210140396"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075953035","display_name":"Anh Tu\u1ea5n Thanh Ph\u1ea1m","orcid":"https://orcid.org/0000-0003-1291-5737"},"institutions":[{"id":"https://openalex.org/I4210140396","display_name":"Becton Dickinson (Canada)","ror":"https://ror.org/031dsww89","country_code":"CA","type":"company","lineage":["https://openalex.org/I146461966","https://openalex.org/I4210140396"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anh Pham","raw_affiliation_strings":["Fairleigh Dickinson University,Vancouver,Canada","Fairleigh Dickinson University, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"Fairleigh Dickinson University,Vancouver,Canada","institution_ids":["https://openalex.org/I4210140396"]},{"raw_affiliation_string":"Fairleigh Dickinson University, Vancouver, Canada","institution_ids":["https://openalex.org/I4210140396"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114778025","display_name":"Tim Oates","orcid":"https://orcid.org/0000-0002-8655-747X"},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tim Oates","raw_affiliation_strings":["University of Maryland Baltimore County,Maryland,USA","University of Maryland Baltimore County, Maryland, USA"],"affiliations":[{"raw_affiliation_string":"University of Maryland Baltimore County,Maryland,USA","institution_ids":["https://openalex.org/I79272384"]},{"raw_affiliation_string":"University of Maryland Baltimore County, Maryland, USA","institution_ids":["https://openalex.org/I79272384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029704418","display_name":"Vasudevan Janarthanan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210140396","display_name":"Becton Dickinson (Canada)","ror":"https://ror.org/031dsww89","country_code":"CA","type":"company","lineage":["https://openalex.org/I146461966","https://openalex.org/I4210140396"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Vasudevan Janarthanan","raw_affiliation_strings":["Fairleigh Dickinson University,Vancouver,Canada","Fairleigh Dickinson University, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"Fairleigh Dickinson University,Vancouver,Canada","institution_ids":["https://openalex.org/I4210140396"]},{"raw_affiliation_string":"Fairleigh Dickinson University, Vancouver, Canada","institution_ids":["https://openalex.org/I4210140396"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5086404791"],"corresponding_institution_ids":["https://openalex.org/I4210140396"],"apc_list":null,"apc_paid":null,"fwci":0.148,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.53420009,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"12","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9463000297546387,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9061999917030334,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7473191022872925},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5787743926048279},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5121109485626221},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.47937825322151184},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.46702268719673157},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.43304795026779175},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.36683911085128784},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.35034847259521484},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10205972194671631},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09225189685821533}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7473191022872925},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5787743926048279},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5121109485626221},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.47937825322151184},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.46702268719673157},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.43304795026779175},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.36683911085128784},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.35034847259521484},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10205972194671631},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09225189685821533},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ccece53047.2021.9569202","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ccece53047.2021.9569202","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE Canadian Conference on Electrical and Computer Engineering (CCECE)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7300000190734863,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W168564468","https://openalex.org/W1496508106","https://openalex.org/W1614298861","https://openalex.org/W1975147762","https://openalex.org/W1978394996","https://openalex.org/W1999638776","https://openalex.org/W2011301426","https://openalex.org/W2038702914","https://openalex.org/W2046589863","https://openalex.org/W2070493638","https://openalex.org/W2076498053","https://openalex.org/W2087347434","https://openalex.org/W2101234009","https://openalex.org/W2131744502","https://openalex.org/W2146292423","https://openalex.org/W2149684865","https://openalex.org/W2158698691","https://openalex.org/W2163614729","https://openalex.org/W2165558283","https://openalex.org/W2166550586","https://openalex.org/W2214665483","https://openalex.org/W2279949369","https://openalex.org/W2330820318","https://openalex.org/W2342249984","https://openalex.org/W2594183968","https://openalex.org/W2618625858","https://openalex.org/W2624413595","https://openalex.org/W2736137960","https://openalex.org/W2750279097","https://openalex.org/W2767284733","https://openalex.org/W2786722833","https://openalex.org/W2911215886","https://openalex.org/W2946965984","https://openalex.org/W2950577311","https://openalex.org/W2962398326","https://openalex.org/W2963454111","https://openalex.org/W2963819570","https://openalex.org/W2964168240","https://openalex.org/W2969396833","https://openalex.org/W2991736596","https://openalex.org/W3005353977","https://openalex.org/W3044169888","https://openalex.org/W3050693196","https://openalex.org/W3085162807","https://openalex.org/W3126767825","https://openalex.org/W3150635270","https://openalex.org/W6606906144","https://openalex.org/W6675354045","https://openalex.org/W6679775712","https://openalex.org/W6682304300","https://openalex.org/W6683915439","https://openalex.org/W6694985117","https://openalex.org/W6703928569","https://openalex.org/W6747927160","https://openalex.org/W6763653667"],"related_works":["https://openalex.org/W2032233321","https://openalex.org/W3121970507","https://openalex.org/W2110028391","https://openalex.org/W54497855","https://openalex.org/W217960748","https://openalex.org/W3125814499","https://openalex.org/W2090827041","https://openalex.org/W2565703248","https://openalex.org/W187246281","https://openalex.org/W2143548620"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,33,74],"apply":[4],"natural":[5],"language":[6],"processing":[7],"methods":[8],"to":[9,52],"develop":[10],"models":[11,55,79],"for":[12,56],"predicting":[13],"physiological":[14,60],"effects":[15,61],"of":[16,27,59],"chemical":[17,72],"substances":[18],"based":[19],"on":[20],"their":[21],"molecular":[22],"structures.":[23],"Using":[24,70],"string":[25],"representations":[26,51],"structure":[28],"as":[29,63],"a":[30,57],"starting":[31],"point,":[32],"vectorize":[34],"molecules":[35],"using":[36],"two":[37],"different":[38],"approaches":[39],"resulting":[40],"in":[41],"sparse":[42],"and":[43,68],"dense":[44],"vector":[45],"representations,":[46],"respectively.":[47],"We":[48],"use":[49],"these":[50],"train":[53],"predictive":[54,83],"variety":[58],"such":[62,78],"toxicity,":[64],"cell":[65],"cycle":[66],"arrest":[67],"proliferation.":[69],"standard":[71],"datasets,":[73],"empirically":[75],"demonstrate":[76],"that":[77],"can":[80],"achieve":[81],"high":[82],"accu-racy.":[84]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
