{"id":"https://openalex.org/W2125599136","doi":"https://doi.org/10.1109/cbms.2011.5999046","title":"Template-based semi-automatic workflow construction for gene expression data analysis","display_name":"Template-based semi-automatic workflow construction for gene expression data analysis","publication_year":2011,"publication_date":"2011-06-01","ids":{"openalex":"https://openalex.org/W2125599136","doi":"https://doi.org/10.1109/cbms.2011.5999046","mag":"2125599136"},"language":"en","primary_location":{"id":"doi:10.1109/cbms.2011.5999046","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2011.5999046","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 24th International Symposium on Computer-Based Medical Systems (CBMS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034844512","display_name":"Ji\u0159\u00ed B\u011blohradsk\u00fd","orcid":null},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Jiri Belohradsky","raw_affiliation_strings":["Czech Technical University, Prague, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Czech Technical University, Prague, Czech Republic","institution_ids":["https://openalex.org/I44504214"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045071041","display_name":"David A. Monge","orcid":"https://orcid.org/0000-0001-6444-4610"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David Monge","raw_affiliation_strings":["Instituto para las Tecnologias de la Informacion y las Comunicaciones, UNCuyo, Argentina","Instituto para las Tecnolog\u00edas de la Informaci\u00f3n y las Comunicaciones, UNCuyo, Argentina"],"affiliations":[{"raw_affiliation_string":"Instituto para las Tecnologias de la Informacion y las Comunicaciones, UNCuyo, Argentina","institution_ids":[]},{"raw_affiliation_string":"Instituto para las Tecnolog\u00edas de la Informaci\u00f3n y las Comunicaciones, UNCuyo, Argentina","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062388770","display_name":"Filip \u017delezn\u00fd","orcid":"https://orcid.org/0000-0001-9780-3376"},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Filip Zelezny","raw_affiliation_strings":["Czech Technical University, Prague, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Czech Technical University, Prague, Czech Republic","institution_ids":["https://openalex.org/I44504214"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006920882","display_name":"Mat\u011bj Holec","orcid":null},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Matej Holec","raw_affiliation_strings":["Czech Technical University, Prague, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Czech Technical University, Prague, Czech Republic","institution_ids":["https://openalex.org/I44504214"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069433446","display_name":"Carlos Garc\u00eda Garino","orcid":"https://orcid.org/0000-0001-8522-6719"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Carlos Garcia Garino","raw_affiliation_strings":["Instituto para las Tecnolog\u00edas de la Informaci\u00f3n y las Comunicaciones, UNCuyo, Argentina"],"affiliations":[{"raw_affiliation_string":"Instituto para las Tecnolog\u00edas de la Informaci\u00f3n y las Comunicaciones, UNCuyo, Argentina","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5034844512"],"corresponding_institution_ids":["https://openalex.org/I44504214"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.19723646,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8691493272781372},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.794005274772644},{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.6444296836853027},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.48210978507995605},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4704655110836029},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.46275898814201355},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38049569725990295},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.32965028285980225},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3227813243865967},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.21578454971313477}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8691493272781372},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.794005274772644},{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.6444296836853027},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.48210978507995605},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4704655110836029},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.46275898814201355},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38049569725990295},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.32965028285980225},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3227813243865967},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21578454971313477},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cbms.2011.5999046","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2011.5999046","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 24th International Symposium on Computer-Based Medical Systems (CBMS)","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.221.4397","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.221.4397","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://labe.felk.cvut.cz/%7Ezelezny/pubs/cbms.11.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6399999856948853}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1570060028","https://openalex.org/W1607317395","https://openalex.org/W1965518084","https://openalex.org/W2020541351","https://openalex.org/W2099547895","https://openalex.org/W2124679016","https://openalex.org/W2148317584","https://openalex.org/W2158217645","https://openalex.org/W2504422188","https://openalex.org/W2592188805","https://openalex.org/W6678271983","https://openalex.org/W6734029469"],"related_works":["https://openalex.org/W2121300814","https://openalex.org/W4234406076","https://openalex.org/W1886613375","https://openalex.org/W4236081792","https://openalex.org/W4250583430","https://openalex.org/W2010731026","https://openalex.org/W2360893094","https://openalex.org/W4390787808","https://openalex.org/W4236036386","https://openalex.org/W4231091074"],"abstract_inverted_index":{"We":[0],"propose":[1,92],"a":[2],"technique":[3],"for":[4,110],"semi-automatic":[5],"construction":[6,99],"of":[7,27,38,55,76,96],"gene":[8,112],"expression":[9,113],"data":[10,32],"analysis":[11,57],"workflows":[12,40,78],"by":[13,85],"grammar-like":[14],"inference":[15],"based":[16],"on":[17],"predefined":[18],"workflow":[19,88,98],"templates.":[20],"The":[21],"templates":[22,71],"represent":[23],"routinely":[24],"used":[25],"sequences":[26],"procedures":[28],"such":[29,39,66],"as":[30,42],"normalization,":[31],"transformation,":[33],"classifier":[34],"learning,":[35],"etc.":[36],"Variations":[37],"(such":[41],"different":[43],"instantiations":[44],"to":[45,63,69],"specific":[46],"algorithms)":[47],"may":[48],"entail":[49],"significant":[50],"variance":[51],"in":[52,104],"the":[53,56,74,81,93,105],"quality":[54],"results":[58],"and":[59,79,100],"our":[60],"formalism":[61],"enables":[62],"automatically":[64],"explore":[65],"variations.":[67],"Adhering":[68],"proven":[70],"helps":[72],"preserve":[73],"sanity":[75],"explored":[77],"prevents":[80],"combinatorial":[82],"explosion":[83],"encountered":[84],"fully":[86],"automatic":[87],"planners.":[89],"Here":[90],"we":[91],"basic":[94],"principles":[95],"template-based":[97],"demonstrate":[101],"their":[102],"working":[103],"publicly":[106],"available":[107],"tool":[108],"XGENE.ORG":[109],"multi-platform":[111],"analysis.":[114]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
