{"id":"https://openalex.org/W2115261945","doi":"https://doi.org/10.1109/cbms.2009.5255446","title":"Identifier and database from the same sequence repository provide the greatest number of correct pairings between RNA and protein data","display_name":"Identifier and database from the same sequence repository provide the greatest number of correct pairings between RNA and protein data","publication_year":2009,"publication_date":"2009-08-01","ids":{"openalex":"https://openalex.org/W2115261945","doi":"https://doi.org/10.1109/cbms.2009.5255446","mag":"2115261945"},"language":"en","primary_location":{"id":"doi:10.1109/cbms.2009.5255446","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2009.5255446","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 22nd IEEE International Symposium on Computer-Based Medical Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046220928","display_name":"Shang-Jung Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Shang-Jung Lee","raw_affiliation_strings":["Department of Biomedical Engineering, McGill University, Canada","Dept. of Biomedical Engineering, McGill University,"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, McGill University, Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Dept. of Biomedical Engineering, McGill University,","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024458992","display_name":"Robert E. Kearney","orcid":"https://orcid.org/0000-0002-5107-6190"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Robert Kearney","raw_affiliation_strings":["Department of Biomedical Engineering, McGill University, Canada","Dept. of Biomedical Engineering, McGill University,"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, McGill University, Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Dept. of Biomedical Engineering, McGill University,","institution_ids":["https://openalex.org/I5023651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5046220928"],"corresponding_institution_ids":["https://openalex.org/I5023651"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14595706,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.9469980597496033},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6094460487365723},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5958630442619324},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5419832468032837},{"id":"https://openalex.org/keywords/unique-identifier","display_name":"Unique identifier","score":0.5018033981323242},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46235334873199463},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4332502484321594},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4150558114051819},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3885990083217621},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33674246072769165},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33375638723373413},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24195894598960876},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24050745368003845},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.17145207524299622},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09702110290527344},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.07413831353187561}],"concepts":[{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.9469980597496033},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6094460487365723},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5958630442619324},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5419832468032837},{"id":"https://openalex.org/C119839945","wikidata":"https://www.wikidata.org/wiki/Q6545185","display_name":"Unique identifier","level":3,"score":0.5018033981323242},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46235334873199463},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4332502484321594},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4150558114051819},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3885990083217621},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33674246072769165},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33375638723373413},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24195894598960876},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24050745368003845},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.17145207524299622},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09702110290527344},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.07413831353187561},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cbms.2009.5255446","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2009.5255446","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 22nd IEEE International Symposium on Computer-Based Medical Systems","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1556136921","https://openalex.org/W2014293131","https://openalex.org/W2018207804","https://openalex.org/W2045234988","https://openalex.org/W2051102111","https://openalex.org/W2105762369","https://openalex.org/W2108787198","https://openalex.org/W2128549389"],"related_works":["https://openalex.org/W2413568490","https://openalex.org/W1913624564","https://openalex.org/W3130054399","https://openalex.org/W4301062032","https://openalex.org/W2319837024","https://openalex.org/W2343500026","https://openalex.org/W2390627310","https://openalex.org/W2413664130","https://openalex.org/W2051731675","https://openalex.org/W2033159440"],"abstract_inverted_index":{"There":[0],"is":[1,45],"increasing":[2],"interest":[3],"in":[4,143],"the":[5,56,61,88,102,107,115,129,133,140],"integrated":[6],"analysis":[7],"of":[8,19,60,73,83,117,139],"RNA":[9],"and":[10,27,52,58,85,90,98,112,132],"protein":[11,28],"datasets":[12],"to":[13,76,146],"provide":[14],"a":[15,20],"more":[16],"holistic":[17],"description":[18],"biological":[21],"system.":[22],"To":[23],"do":[24],"so,":[25],"gene":[26,125],"identifiers":[29,38,51,84],"can":[30],"be":[31,121],"paired":[32],"by":[33,68],"using":[34,49,80,96,128],"databases":[35,54,86],"that":[36,95,119],"cross-link":[37],"from":[39,87,101],"multiple":[40],"public":[41],"databases.":[42],"However,":[43],"little":[44],"known":[46],"about":[47],"how":[48],"different":[50,81],"cross-linking":[53,99],"influence":[55],"accuracy":[57],"completeness":[59],"resulting":[62],"gene-protein":[63,110],"pairs.":[64],"We":[65,93],"investigated":[66],"this":[67],"matching":[69],"an":[70],"existing":[71],"dataset":[72,145],"rat":[74],"proteins":[75,118,142],"their":[77,124,147],"corresponding":[78,148],"genes":[79],"combinations":[82],"NCBI":[89],"PIR":[91],"repositories.":[92],"found":[94],"identifier":[97,131],"database":[100],"same":[103],"sequence":[104],"repository":[105],"yielded":[106],"most":[108],"correct":[109],"pairs":[111],"consequently":[113],"maximized":[114],"amount":[116],"could":[120],"compared":[122],"with":[123],"counterparts.":[126],"Overall":[127],"GeneInfo":[130],"Entrez":[134],"database,":[135],"we":[136],"matched":[137],"84%":[138],"4,016":[141],"our":[144],"genes.":[149]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
