{"id":"https://openalex.org/W2069037310","doi":"https://doi.org/10.1109/bmei.2013.6747031","title":"Building localized bioinformatics platform based on Galaxy and high performance computing cluster","display_name":"Building localized bioinformatics platform based on Galaxy and high performance computing cluster","publication_year":2013,"publication_date":"2013-12-01","ids":{"openalex":"https://openalex.org/W2069037310","doi":"https://doi.org/10.1109/bmei.2013.6747031","mag":"2069037310"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2013.6747031","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2013.6747031","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 6th International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101703971","display_name":"Xiaolei Wang","orcid":"https://orcid.org/0000-0001-7615-0409"},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao-lei Wang","raw_affiliation_strings":["Institute of Health Service and Medical Information, Academy of Military Medical Sciences, Beijing, China","Inst. of Health Service & Med. Inf., Acad. of Mil. Med. Sci., Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Health Service and Medical Information, Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]},{"raw_affiliation_string":"Inst. of Health Service & Med. Inf., Acad. of Mil. Med. Sci., Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061932133","display_name":"Jiangyu Li","orcid":"https://orcid.org/0000-0003-0533-1397"},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiang-yu Li","raw_affiliation_strings":["Institute of Health Service and Medical Information, Academy of Military Medical Sciences, Beijing, China","Inst. of Health Service & Med. Inf., Acad. of Mil. Med. Sci., Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Health Service and Medical Information, Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]},{"raw_affiliation_string":"Inst. of Health Service & Med. Inf., Acad. of Mil. Med. Sci., Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100355988","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0002-8070-1477"},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Liu","raw_affiliation_strings":["Institute of Health Service and Medical Information, Academy of Military Medical Sciences, Beijing, China","Inst. of Health Service & Med. Inf., Acad. of Mil. Med. Sci., Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Health Service and Medical Information, Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]},{"raw_affiliation_string":"Inst. of Health Service & Med. Inf., Acad. of Mil. Med. Sci., Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113746410","display_name":"Yufeng Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu-feng Wang","raw_affiliation_strings":["Institute of Health Service and Medical Information, Academy of Military Medical Sciences, Beijing, China","Inst. of Health Service & Med. Inf., Acad. of Mil. Med. Sci., Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Health Service and Medical Information, Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]},{"raw_affiliation_string":"Inst. of Health Service & Med. Inf., Acad. of Mil. Med. Sci., Beijing, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102751782","display_name":"Dongsheng Zhao","orcid":"https://orcid.org/0000-0003-2616-8891"},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong-sheng Zhao","raw_affiliation_strings":["Institute of Health Service and Medical Information, Academy of Military Medical Sciences, Beijing, China","Inst. of Health Service & Med. Inf., Acad. of Mil. Med. Sci., Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Health Service and Medical Information, Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]},{"raw_affiliation_string":"Inst. of Health Service & Med. Inf., Acad. of Mil. Med. Sci., Beijing, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I2802541053"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.1712508,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"9","issue":null,"first_page":"712","last_page":"716"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9690999984741211,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7579711079597473},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.5920229554176331},{"id":"https://openalex.org/keywords/computer-cluster","display_name":"Computer cluster","score":0.5834149718284607},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.5588864088058472},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5299177169799805},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.4806039035320282},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48011040687561035},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4651744067668915},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36869513988494873},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2782090902328491},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1296045184135437}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7579711079597473},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.5920229554176331},{"id":"https://openalex.org/C29140674","wikidata":"https://www.wikidata.org/wiki/Q206637","display_name":"Computer cluster","level":2,"score":0.5834149718284607},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.5588864088058472},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5299177169799805},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.4806039035320282},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48011040687561035},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4651744067668915},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36869513988494873},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2782090902328491},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1296045184135437},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bmei.2013.6747031","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2013.6747031","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 6th International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1518437340","https://openalex.org/W1583240815","https://openalex.org/W1988460088","https://openalex.org/W2055043387","https://openalex.org/W2055503200","https://openalex.org/W2097065948","https://openalex.org/W2119180969","https://openalex.org/W2124985265","https://openalex.org/W2136145671","https://openalex.org/W2136482257","https://openalex.org/W2141458291","https://openalex.org/W2161444534","https://openalex.org/W2171808845","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W1824707887","https://openalex.org/W2068583628","https://openalex.org/W169905258","https://openalex.org/W2013271762","https://openalex.org/W1570043218","https://openalex.org/W3146449452","https://openalex.org/W2162684709","https://openalex.org/W2115770466","https://openalex.org/W2111726532","https://openalex.org/W2370281702"],"abstract_inverted_index":{"With":[0],"the":[1,13,40,87,113,128],"rapid":[2],"development":[3],"of":[4,15,25,89,130],"high-throughput":[5],"sequencing":[6],"technology,":[7],"biomedical":[8,56],"research":[9],"has":[10,115],"entered":[11],"into":[12,67,118],"era":[14],"big":[16],"data.":[17],"It":[18],"causes":[19],"problems":[20],"about":[21],"storage":[22,131],"and":[23,50,61,65,78,85,91,108,127,152,155],"analysis":[24,45,53,151],"massive":[26],"biological":[27],"data":[28,44],"which":[29],"need":[30],"to":[31,47,83,98],"be":[32],"solved":[33],"by":[34],"high-performance":[35,42],"computing.":[36],"Therefore,":[37],"we":[38],"build":[39,72],"localized":[41],"one-stop":[43],"platform":[46,114,135],"provide":[48],"convenient":[49],"efficient":[51],"computational":[52],"services":[54],"for":[55,105],"researchers.":[57],"We":[58],"deploy":[59],"Galaxy":[60,68,100],"integrate":[62],"software":[63],"tools":[64],"datasets":[66],"in":[69,81],"computing":[70,110],"cluster,":[71],"stable":[73],"web":[74],"service,":[75],"FTP":[76],"service":[77],"management":[79,95],"database":[80],"order":[82],"optimize":[84],"improve":[86],"performance":[88,123],"Galaxy,":[90],"use":[92],"distributed":[93],"resource":[94],"application":[96],"interface":[97],"collaborate":[99],"with":[101],"Sun":[102],"Grid":[103],"Engine":[104],"automatically":[106],"scheduling":[107],"assigning":[109],"resources.":[111],"Currently":[112],"been":[116],"put":[117],"trial":[119],"operation.":[120],"The":[121,134],"peak":[122],"is":[124,132],"10":[125],"Teraflops":[126],"capacity":[129],"40TB.":[133],"provides":[136],"many":[137],"functions":[138],"such":[139],"as":[140],"sequence":[141,144],"alignment,":[142],"short":[143],"mapping,":[145],"gene":[146],"annotation,":[147],"transcriptome":[148],"analysis,":[149,154],"metagenomic":[150],"phylogenetic":[153],"approximately":[156],"700GB":[157],"reference":[158],"databases":[159],"including":[160],"human":[161],"genome,":[162],"viruses,":[163],"bacteria,":[164],"fungi,":[165],"etc.":[166]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}