{"id":"https://openalex.org/W2004148449","doi":"https://doi.org/10.1109/bmei.2013.6746988","title":"Blast-Parallel: The parallelizing implementation of sequence alignment algorithms based on Hadoop platform","display_name":"Blast-Parallel: The parallelizing implementation of sequence alignment algorithms based on Hadoop platform","publication_year":2013,"publication_date":"2013-12-01","ids":{"openalex":"https://openalex.org/W2004148449","doi":"https://doi.org/10.1109/bmei.2013.6746988","mag":"2004148449"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2013.6746988","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2013.6746988","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 6th International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101006162","display_name":"Ming Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I120379545","display_name":"Inner Mongolia Agricultural University","ror":"https://ror.org/015d0jq83","country_code":"CN","type":"education","lineage":["https://openalex.org/I120379545"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Meng","raw_affiliation_strings":["Coll. of Comput. & Inf. Eng., Inner Mongolia Agric. Univ., Huhhot, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Coll. of Comput. & Inf. Eng., Inner Mongolia Agric. Univ., Huhhot, China","institution_ids":["https://openalex.org/I120379545"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052223213","display_name":"Jing Gao","orcid":"https://orcid.org/0000-0002-5317-2733"},"institutions":[{"id":"https://openalex.org/I120379545","display_name":"Inner Mongolia Agricultural University","ror":"https://ror.org/015d0jq83","country_code":"CN","type":"education","lineage":["https://openalex.org/I120379545"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Gao","raw_affiliation_strings":["College of Computer and Information Engineering, Inner Mongolia Agricultural University, Huhhot, China","Coll. of Comput. & Inf. Eng., Inner Mongolia Agric. Univ., Huhhot, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Inner Mongolia Agricultural University, Huhhot, China","institution_ids":["https://openalex.org/I120379545"]},{"raw_affiliation_string":"Coll. of Comput. & Inf. Eng., Inner Mongolia Agric. Univ., Huhhot, China","institution_ids":["https://openalex.org/I120379545"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038067048","display_name":"Junjie Chen","orcid":"https://orcid.org/0000-0003-4509-2271"},"institutions":[{"id":"https://openalex.org/I120379545","display_name":"Inner Mongolia Agricultural University","ror":"https://ror.org/015d0jq83","country_code":"CN","type":"education","lineage":["https://openalex.org/I120379545"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun-jie Chen","raw_affiliation_strings":["College of Computer and Information Engineering, Inner Mongolia Agricultural University, Huhhot, China","Coll. of Comput. & Inf. Eng., Inner Mongolia Agric. Univ., Huhhot, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Inner Mongolia Agricultural University, Huhhot, China","institution_ids":["https://openalex.org/I120379545"]},{"raw_affiliation_string":"Coll. of Comput. & Inf. Eng., Inner Mongolia Agric. Univ., Huhhot, China","institution_ids":["https://openalex.org/I120379545"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I120379545"],"apc_list":null,"apc_paid":null,"fwci":2.0505,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.85796038,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"1","issue":null,"first_page":"465","last_page":"470"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8314887285232544},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.5983030200004578},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5842996835708618},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5739258527755737},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.564389705657959},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5357270836830139},{"id":"https://openalex.org/keywords/parallel-algorithm","display_name":"Parallel algorithm","score":0.4744076430797577},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.44673678278923035},{"id":"https://openalex.org/keywords/parallel-processing","display_name":"Parallel processing","score":0.4101763367652893},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.40879642963409424},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1759187877178192},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.07883873581886292},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06502795219421387}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8314887285232544},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.5983030200004578},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5842996835708618},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5739258527755737},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.564389705657959},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5357270836830139},{"id":"https://openalex.org/C120373497","wikidata":"https://www.wikidata.org/wiki/Q1087987","display_name":"Parallel algorithm","level":2,"score":0.4744076430797577},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.44673678278923035},{"id":"https://openalex.org/C106515295","wikidata":"https://www.wikidata.org/wiki/Q26806595","display_name":"Parallel processing","level":2,"score":0.4101763367652893},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.40879642963409424},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1759187877178192},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.07883873581886292},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06502795219421387},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bmei.2013.6746988","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2013.6746988","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 6th International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W108704654","https://openalex.org/W145805655","https://openalex.org/W1536168490","https://openalex.org/W1978885894","https://openalex.org/W1981644820","https://openalex.org/W2055043387","https://openalex.org/W2057783089","https://openalex.org/W2075849238","https://openalex.org/W2087064593","https://openalex.org/W2096041635","https://openalex.org/W2103644816","https://openalex.org/W2112286591","https://openalex.org/W2122482436","https://openalex.org/W2130846267","https://openalex.org/W2131229759","https://openalex.org/W2142678478","https://openalex.org/W2155957132","https://openalex.org/W2156137607","https://openalex.org/W2157812308","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2948014085","https://openalex.org/W2004215917","https://openalex.org/W2103737249","https://openalex.org/W1974956921","https://openalex.org/W2139695554","https://openalex.org/W2152950327","https://openalex.org/W1972247471","https://openalex.org/W1486249959","https://openalex.org/W2166325055","https://openalex.org/W1989397826"],"abstract_inverted_index":{"The":[0],"sequence":[1,44,51],"alignment":[2,45,52],"is":[3],"a":[4,15],"basic":[5],"method":[6],"for":[7,18,73],"processing":[8],"the":[9,20,23,32,40,47,58,70,74,82,90,97,105,109,119,128,131,135,147],"information":[10,33],"in":[11],"Bioinformatics,":[12],"it":[13],"has":[14,122,139],"great":[16],"significance":[17],"finding":[19],"function":[21],"and":[22,28,31,46,101,108,130],"structure":[24],"of":[25,34,43,76,96,104,134,146],"nucleic":[26],"acids":[27],"protein":[29],"sequences":[30],"evolution.":[35],"This":[36],"paper":[37,80],"briefly":[38],"describes":[39],"relevant":[41],"issues":[42],"most":[48],"common":[49],"local":[50],"algorithms,":[53],"Blast":[54,59,99,120],"algorithm.":[55,92,149],"At":[56],"present,":[57],"algorithm":[60,84,100,107,111,121,137],"which":[61,138],"provided":[62],"by":[63,85],"NCBI":[64],"or":[65],"stand-alone":[66,98],"can":[67,142],"not":[68],"meet":[69],"actual":[71],"demand":[72],"flood":[75],"biological":[77],"data,":[78],"this":[79],"achieves":[81],"Blast-Parallel":[83,110,136],"further":[86],"improvement":[87],"based":[88,112],"on":[89,113],"Hadoop-Blast":[91,106,148],"Through":[93],"serial":[94],"experiments":[95,103],"parallelizing":[102],"Hadoop":[114],"platform,":[115],"results":[116],"show":[117],"that":[118],"significantly":[123],"higher":[124],"execution":[125],"efficiency":[126],"after":[127],"parallelization,":[129],"matching":[132],"speed":[133],"been":[140],"improved":[141],"achieve":[143],"1~1.5":[144],"times":[145]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
