{"id":"https://openalex.org/W2007613791","doi":"https://doi.org/10.1109/bmei.2012.6513091","title":"The analysis of similarity for promoter sequence structures in yeast genes","display_name":"The analysis of similarity for promoter sequence structures in yeast genes","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2007613791","doi":"https://doi.org/10.1109/bmei.2012.6513091","mag":"2007613791"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2012.6513091","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2012.6513091","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 5th International Conference on BioMedical Engineering and Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010818843","display_name":"Simon Hu","orcid":"https://orcid.org/0000-0002-9832-6679"},"institutions":[{"id":"https://openalex.org/I195019228","display_name":"Yunnan Agricultural University","ror":"https://ror.org/04dpa3g90","country_code":"CN","type":"education","lineage":["https://openalex.org/I195019228"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jun Hu","raw_affiliation_strings":["School of Science and Information Engineering, Yunnan Agricultural University, Kunming, China","Sch. of Sci. & Inf. Eng., Yunnan Agric. Univ., Kunming, China"],"affiliations":[{"raw_affiliation_string":"School of Science and Information Engineering, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]},{"raw_affiliation_string":"Sch. of Sci. & Inf. Eng., Yunnan Agric. Univ., Kunming, China","institution_ids":["https://openalex.org/I195019228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047425057","display_name":"Hongxia Zhao","orcid":"https://orcid.org/0000-0003-3934-8082"},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongxia Zhao","raw_affiliation_strings":["School of Mathematics and Statistics, Yunnan University, Kunming, China","Sch. of Math. & Stat., Yunnan Univ., Kunming, China"],"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, Yunnan University, Kunming, China","institution_ids":["https://openalex.org/I189210763"]},{"raw_affiliation_string":"Sch. of Math. & Stat., Yunnan Univ., Kunming, China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111307689","display_name":"Xueyou Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xueyou Liang","raw_affiliation_strings":["High School Affiliated to Southwest University, Chongqing, China","Affiliated High Sch., Southwest Univ., Chongqing, China"],"affiliations":[{"raw_affiliation_string":"High School Affiliated to Southwest University, Chongqing, China","institution_ids":["https://openalex.org/I142108993"]},{"raw_affiliation_string":"Affiliated High Sch., Southwest Univ., Chongqing, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100444014","display_name":"Dan Chen","orcid":"https://orcid.org/0009-0002-1101-1779"},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dan Chen","raw_affiliation_strings":["School of Mathematics and Statistics, Yunnan University, Kunming, China","Sch. of Math. & Stat., Yunnan Univ., Kunming, China"],"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, Yunnan University, Kunming, China","institution_ids":["https://openalex.org/I189210763"]},{"raw_affiliation_string":"Sch. of Math. & Stat., Yunnan Univ., Kunming, China","institution_ids":["https://openalex.org/I189210763"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5010818843"],"corresponding_institution_ids":["https://openalex.org/I195019228"],"apc_list":null,"apc_paid":null,"fwci":0.2627,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.56284556,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"919","last_page":"922"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.8578649759292603},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7565815448760986},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.603761613368988},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5993232131004333},{"id":"https://openalex.org/keywords/transcriptional-regulation","display_name":"Transcriptional regulation","score":0.5784053802490234},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5328488945960999},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.42433929443359375},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3859061002731323},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1489187479019165},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.062338441610336304}],"concepts":[{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.8578649759292603},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7565815448760986},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.603761613368988},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5993232131004333},{"id":"https://openalex.org/C27153228","wikidata":"https://www.wikidata.org/wiki/Q3787274","display_name":"Transcriptional regulation","level":4,"score":0.5784053802490234},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5328488945960999},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.42433929443359375},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3859061002731323},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1489187479019165},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.062338441610336304},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bmei.2012.6513091","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2012.6513091","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 5th International Conference on BioMedical Engineering and Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W2017200304","https://openalex.org/W2032231928","https://openalex.org/W2039286232","https://openalex.org/W2047306036","https://openalex.org/W2076338191","https://openalex.org/W2111322461","https://openalex.org/W2130886513","https://openalex.org/W2144575079","https://openalex.org/W2335525089","https://openalex.org/W2352392843","https://openalex.org/W2360545119","https://openalex.org/W2370123836","https://openalex.org/W3208912589","https://openalex.org/W4298849694","https://openalex.org/W6705966782","https://openalex.org/W7054876719"],"related_works":["https://openalex.org/W1969771092","https://openalex.org/W2795723184","https://openalex.org/W2025529750","https://openalex.org/W2891858816","https://openalex.org/W184057646","https://openalex.org/W2042874675","https://openalex.org/W129398428","https://openalex.org/W3212414177","https://openalex.org/W2007418658","https://openalex.org/W1627262848"],"abstract_inverted_index":{"The":[0,8,50],"transcriptional":[1,61,93,103,131],"frequencies":[2,62,104],"of":[3,10,16,28,55,57,65,90,101,105,111,127,134],"different":[4],"genes":[5,30,58,91,129,136],"are":[6,31,44],"distinct.":[7],"structures":[9,126],"promoter":[11,87,113,125],"sequences":[12],"may":[13],"be":[14],"one":[15],"the":[17,26,72,86,97,99,102,107,109,124],"causes":[18],"leading":[19],"to":[20,37,122],"such":[21],"distinction.":[22],"In":[23,95],"this":[24],"paper,":[25],"promoters":[27,43,56],"yeast":[29,128],"divided":[32],"into":[33],"several":[34],"groups":[35],"according":[36],"certain":[38],"principles":[39],"and":[40,63,92,130],"lowly-transcribed":[41],"gene":[42],"taken":[45],"as":[46],"a":[47,81],"control":[48,66],"set.":[49],"difference":[51,100,110],"between":[52,85],"sequence":[53,88,114],"structure":[54,89],"with":[59],"higher":[60],"that":[64,78],"set":[67],"is":[68,76,80],"analyzed":[69],"based":[70],"on":[71],"similarity":[73],"measure.":[74],"It":[75],"found":[77],"there":[79],"linear":[82],"positive":[83],"correlation":[84],"frequencies.":[94],"general,":[96],"greater":[98],"genes,":[106],"more":[108],"their":[112],"structures.":[115],"Our":[116],"studies":[117],"can":[118],"helpful":[119],"for":[120],"us":[121],"understand":[123],"regulation":[132],"mechanism":[133],"eukaryotic":[135],"well.":[137]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}