{"id":"https://openalex.org/W2032007699","doi":"https://doi.org/10.1109/bmei.2011.6098677","title":"A clinical omics database integrating epidemiology, clinical, and omics data for colorectal cancer translational research","display_name":"A clinical omics database integrating epidemiology, clinical, and omics data for colorectal cancer translational research","publication_year":2011,"publication_date":"2011-10-01","ids":{"openalex":"https://openalex.org/W2032007699","doi":"https://doi.org/10.1109/bmei.2011.6098677","mag":"2032007699"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2011.6098677","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2011.6098677","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 4th International Conference on Biomedical Engineering and Informatics (BMEI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100758590","display_name":"Ling Zheng","orcid":"https://orcid.org/0000-0003-0047-5826"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I1288702032","display_name":"Ministry of Education","ror":"https://ror.org/05p70jq59","country_code":"NZ","type":"government","lineage":["https://openalex.org/I1288702032"]}],"countries":["CN","NZ"],"is_corresponding":true,"raw_author_name":"Ling Zheng","raw_affiliation_strings":["College of Biomedical Engineering and Instrument Science, The Key Laboratory of Biomedical Engineering, Ministry of Education, Zhejiang University, Hangzhou, China","College of Biomedical Engineering and Instrument Science of Zhejiang University, The Key Laboratory of Biomedical Engineering, Ministry of Education, Hangzhou, China#TAB#"],"affiliations":[{"raw_affiliation_string":"College of Biomedical Engineering and Instrument Science, The Key Laboratory of Biomedical Engineering, Ministry of Education, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I1288702032"]},{"raw_affiliation_string":"College of Biomedical Engineering and Instrument Science of Zhejiang University, The Key Laboratory of Biomedical Engineering, Ministry of Education, Hangzhou, China#TAB#","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100336213","display_name":"Li Wang","orcid":"https://orcid.org/0000-0003-2838-9807"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I1288702032","display_name":"Ministry of Education","ror":"https://ror.org/05p70jq59","country_code":"NZ","type":"government","lineage":["https://openalex.org/I1288702032"]}],"countries":["CN","NZ"],"is_corresponding":false,"raw_author_name":"Li Wang","raw_affiliation_strings":["College of Biomedical Engineering and Instrument Science, The Key Laboratory of Biomedical Engineering, Ministry of Education, Zhejiang University, Hangzhou, China","College of Biomedical Engineering and Instrument Science of Zhejiang University, The Key Laboratory of Biomedical Engineering, Ministry of Education, Hangzhou, China#TAB#"],"affiliations":[{"raw_affiliation_string":"College of Biomedical Engineering and Instrument Science, The Key Laboratory of Biomedical Engineering, Ministry of Education, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I1288702032"]},{"raw_affiliation_string":"College of Biomedical Engineering and Instrument Science of Zhejiang University, The Key Laboratory of Biomedical Engineering, Ministry of Education, Hangzhou, China#TAB#","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100359341","display_name":"Da Wang","orcid":"https://orcid.org/0000-0003-4955-8999"},"institutions":[{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Da Wang","raw_affiliation_strings":["Department of Colorectal Surgery, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, China"],"affiliations":[{"raw_affiliation_string":"Department of Colorectal Surgery, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I2802390878","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003738052","display_name":"Ning Deng","orcid":"https://orcid.org/0000-0002-6573-1061"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I1288702032","display_name":"Ministry of Education","ror":"https://ror.org/05p70jq59","country_code":"NZ","type":"government","lineage":["https://openalex.org/I1288702032"]}],"countries":["CN","NZ"],"is_corresponding":false,"raw_author_name":"Ning Deng","raw_affiliation_strings":["College of Biomedical Engineering and Instrument Science, The Key Laboratory of Biomedical Engineering, Ministry of Education, Zhejiang University, Hangzhou, China","College of Biomedical Engineering and Instrument Science of Zhejiang University, The Key Laboratory of Biomedical Engineering, Ministry of Education, Hangzhou, China#TAB#"],"affiliations":[{"raw_affiliation_string":"College of Biomedical Engineering and Instrument Science, The Key Laboratory of Biomedical Engineering, Ministry of Education, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I1288702032"]},{"raw_affiliation_string":"College of Biomedical Engineering and Instrument Science of Zhejiang University, The Key Laboratory of Biomedical Engineering, Ministry of Education, Hangzhou, China#TAB#","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050004899","display_name":"Xudong L\u00fc","orcid":"https://orcid.org/0000-0001-7658-5250"},"institutions":[{"id":"https://openalex.org/I1288702032","display_name":"Ministry of Education","ror":"https://ror.org/05p70jq59","country_code":"NZ","type":"government","lineage":["https://openalex.org/I1288702032"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN","NZ"],"is_corresponding":false,"raw_author_name":"Xudong Lu","raw_affiliation_strings":["College of Biomedical Engineering and Instrument Science, The Key Laboratory of Biomedical Engineering, Ministry of Education, Zhejiang University, Hangzhou, China","College of Biomedical Engineering and Instrument Science of Zhejiang University, The Key Laboratory of Biomedical Engineering, Ministry of Education, Hangzhou, China#TAB#"],"affiliations":[{"raw_affiliation_string":"College of Biomedical Engineering and Instrument Science, The Key Laboratory of Biomedical Engineering, Ministry of Education, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I1288702032"]},{"raw_affiliation_string":"College of Biomedical Engineering and Instrument Science of Zhejiang University, The Key Laboratory of Biomedical Engineering, Ministry of Education, Hangzhou, China#TAB#","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056801542","display_name":"Huilong Duan","orcid":"https://orcid.org/0000-0003-3893-213X"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I1288702032","display_name":"Ministry of Education","ror":"https://ror.org/05p70jq59","country_code":"NZ","type":"government","lineage":["https://openalex.org/I1288702032"]}],"countries":["CN","NZ"],"is_corresponding":false,"raw_author_name":"Huilong Duan","raw_affiliation_strings":["College of Biomedical Engineering and Instrument Science, The Key Laboratory of Biomedical Engineering, Ministry of Education, Zhejiang University, Hangzhou, China","College of Biomedical Engineering and Instrument Science of Zhejiang University, The Key Laboratory of Biomedical Engineering, Ministry of Education, Hangzhou, China#TAB#"],"affiliations":[{"raw_affiliation_string":"College of Biomedical Engineering and Instrument Science, The Key Laboratory of Biomedical Engineering, Ministry of Education, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I1288702032"]},{"raw_affiliation_string":"College of Biomedical Engineering and Instrument Science of Zhejiang University, The Key Laboratory of Biomedical Engineering, Ministry of Education, Hangzhou, China#TAB#","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100758590"],"corresponding_institution_ids":["https://openalex.org/I1288702032","https://openalex.org/I76130692"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.08565264,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"55","issue":null,"first_page":"2031","last_page":"2035"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.7222579121589661},{"id":"https://openalex.org/keywords/translational-research","display_name":"Translational research","score":0.6801589727401733},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.6147077679634094},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5846190452575684},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4930417239665985},{"id":"https://openalex.org/keywords/clinical-practice","display_name":"Clinical Practice","score":0.45473653078079224},{"id":"https://openalex.org/keywords/clinical-epidemiology","display_name":"Clinical epidemiology","score":0.42577195167541504},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4078199863433838},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.40304818749427795},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.37218204140663147},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36897552013397217},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3334343433380127},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.30072614550590515},{"id":"https://openalex.org/keywords/epidemiology","display_name":"Epidemiology","score":0.2949061989784241},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16561710834503174},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11658740043640137},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.11441779136657715}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.7222579121589661},{"id":"https://openalex.org/C128544194","wikidata":"https://www.wikidata.org/wiki/Q474859","display_name":"Translational research","level":2,"score":0.6801589727401733},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.6147077679634094},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5846190452575684},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4930417239665985},{"id":"https://openalex.org/C2779974597","wikidata":"https://www.wikidata.org/wiki/Q28448986","display_name":"Clinical Practice","level":2,"score":0.45473653078079224},{"id":"https://openalex.org/C2994161385","wikidata":"https://www.wikidata.org/wiki/Q65089331","display_name":"Clinical epidemiology","level":3,"score":0.42577195167541504},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4078199863433838},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.40304818749427795},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.37218204140663147},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36897552013397217},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3334343433380127},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.30072614550590515},{"id":"https://openalex.org/C107130276","wikidata":"https://www.wikidata.org/wiki/Q133805","display_name":"Epidemiology","level":2,"score":0.2949061989784241},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16561710834503174},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11658740043640137},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.11441779136657715},{"id":"https://openalex.org/C512399662","wikidata":"https://www.wikidata.org/wiki/Q3505712","display_name":"Family medicine","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bmei.2011.6098677","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2011.6098677","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 4th International Conference on Biomedical Engineering and Informatics (BMEI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7799999713897705,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1758248157","https://openalex.org/W1963559405","https://openalex.org/W1971237305","https://openalex.org/W2134049405","https://openalex.org/W2169129708"],"related_works":["https://openalex.org/W2366107444","https://openalex.org/W4388145910","https://openalex.org/W2381570729","https://openalex.org/W1976205134","https://openalex.org/W4248336175","https://openalex.org/W2031260042","https://openalex.org/W2391445434","https://openalex.org/W3009369890","https://openalex.org/W3031548821","https://openalex.org/W4243930727"],"abstract_inverted_index":{"To":[0],"provide":[1,50],"an":[2],"open":[3],"translational":[4,69],"research":[5,16,85],"platform":[6],"to":[7,115],"narrow":[8],"the":[9,72,81,97,107,117],"gap":[10],"between":[11],"clinical":[12,25,31,58,88,98],"practice":[13],"and":[14,32,54,62,80,119],"laboratory":[15],"of":[17,74,83,111,122],"colorectal":[18,67,78],"cancer,":[19],"we":[20,49,102],"construct":[21],"a":[22],"more":[23,40],"comprehensive":[24],"omics":[26,33,99],"database":[27,114],"integrating":[28],"not":[29],"only":[30],"data,":[34],"but":[35],"also":[36],"epidemiology":[37],"data":[38,55],"from":[39],"than":[41],"150":[42],"patients.":[43],"Based":[44],"on":[45,96],"this":[46,112],"integrated":[47,52,113],"database,":[48],"query,":[51],"view,":[53],"analysis":[56],"for":[57],"physicians,":[59],"molecular":[60],"biologists,":[61],"other":[63],"researchers":[64],"related":[65],"with":[66],"cancer":[68,79],"research,":[70],"facilitating":[71],"investigation":[73],"genotype-phenotype":[75],"correlations":[76],"in":[77,87,106],"application":[82],"basic":[84],"results":[86],"practice.":[89],"This":[90],"paper":[91],"presents":[92],"our":[93],"present":[94],"work":[95],"database.":[100],"Specifically,":[101],"apply":[103],"EAV-ER":[104],"model":[105,109],"concept":[108],"design":[110],"accommodate":[116],"dynamic":[118],"sparse":[120],"nature":[121],"biomedical":[123],"data.":[124]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
