{"id":"https://openalex.org/W2127776024","doi":"https://doi.org/10.1109/bmei.2009.5302480","title":"A Hybrid Approach for Biomedical Entity Name Recognition","display_name":"A Hybrid Approach for Biomedical Entity Name Recognition","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2127776024","doi":"https://doi.org/10.1109/bmei.2009.5302480","mag":"2127776024"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2009.5302480","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2009.5302480","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 2nd International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100692171","display_name":"Lejun Gong","orcid":null},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Le-Jun Gong","raw_affiliation_strings":["State Key Laboratory of Bioelectronics, Department of Biological Science and Medical Engineering, South-East University, Nanjing, China","Dept. of Biol. Sci. & Med. Eng., Southeast Univ., Nanjing, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioelectronics, Department of Biological Science and Medical Engineering, South-East University, Nanjing, China","institution_ids":["https://openalex.org/I76569877","https://openalex.org/I4387154005"]},{"raw_affiliation_string":"Dept. of Biol. Sci. & Med. Eng., Southeast Univ., Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114074977","display_name":"Yi Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Yuan","raw_affiliation_strings":["State Key Laboratory of Bioelectronics, Department of Biological Science and Medical Engineering, South-East University, Nanjing, China","Dept. of Biol. Sci. & Med. Eng., Southeast Univ., Nanjing, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioelectronics, Department of Biological Science and Medical Engineering, South-East University, Nanjing, China","institution_ids":["https://openalex.org/I76569877","https://openalex.org/I4387154005"]},{"raw_affiliation_string":"Dept. of Biol. Sci. & Med. Eng., Southeast Univ., Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015499400","display_name":"You-Bing Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"You-Bing Wei","raw_affiliation_strings":["State Key Laboratory of Bioelectronics, Department of Biological Science and Medical Engineering, South-East University, Nanjing, China","Dept. of Biol. Sci. & Med. Eng., Southeast Univ., Nanjing, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioelectronics, Department of Biological Science and Medical Engineering, South-East University, Nanjing, China","institution_ids":["https://openalex.org/I76569877","https://openalex.org/I4387154005"]},{"raw_affiliation_string":"Dept. of Biol. Sci. & Med. Eng., Southeast Univ., Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082259816","display_name":"Xiao Sun","orcid":"https://orcid.org/0000-0003-1048-7775"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]},{"id":"https://openalex.org/I4387154005","display_name":"State Key Laboratory of Digital Medical Engineering","ror":"https://ror.org/03ab0at74","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387154005","https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Sun","raw_affiliation_strings":["State Key Laboratory of Bioelectronics, Department of Biological Science and Medical Engineering, South-East University, Nanjing, China","Dept. of Biol. Sci. & Med. Eng., Southeast Univ., Nanjing, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioelectronics, Department of Biological Science and Medical Engineering, South-East University, Nanjing, China","institution_ids":["https://openalex.org/I76569877","https://openalex.org/I4387154005"]},{"raw_affiliation_string":"Dept. of Biol. Sci. & Med. Eng., Southeast Univ., Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100692171"],"corresponding_institution_ids":["https://openalex.org/I4387154005","https://openalex.org/I76569877"],"apc_list":null,"apc_paid":null,"fwci":0.1312,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.54422038,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"1","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9855999946594238,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8638108968734741},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.7883931398391724},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6467151641845703},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.6303730010986328},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6213804483413696},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5783290863037109},{"id":"https://openalex.org/keywords/named-entity","display_name":"Named entity","score":0.5487712621688843},{"id":"https://openalex.org/keywords/entity-linking","display_name":"Entity linking","score":0.514777660369873},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.42814886569976807},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4188556969165802},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.23858100175857544},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.10848519206047058},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.08692201972007751}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8638108968734741},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.7883931398391724},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6467151641845703},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.6303730010986328},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6213804483413696},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5783290863037109},{"id":"https://openalex.org/C2777889803","wikidata":"https://www.wikidata.org/wiki/Q25047676","display_name":"Named entity","level":2,"score":0.5487712621688843},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.514777660369873},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.42814886569976807},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4188556969165802},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.23858100175857544},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.10848519206047058},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.08692201972007751},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bmei.2009.5302480","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2009.5302480","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 2nd International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6700000166893005}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1976097579","https://openalex.org/W1994306321","https://openalex.org/W2009341227","https://openalex.org/W2021331223","https://openalex.org/W2024159593","https://openalex.org/W2031950862","https://openalex.org/W2036565532","https://openalex.org/W2097606805","https://openalex.org/W2099369363","https://openalex.org/W2101150786","https://openalex.org/W2103017472","https://openalex.org/W2113040794","https://openalex.org/W2144001613","https://openalex.org/W2147558260","https://openalex.org/W2154773184","https://openalex.org/W2163107094","https://openalex.org/W2168905447","https://openalex.org/W2169918010","https://openalex.org/W6682559563","https://openalex.org/W6790546568"],"related_works":["https://openalex.org/W2186562580","https://openalex.org/W2155874911","https://openalex.org/W4255258373","https://openalex.org/W2593907245","https://openalex.org/W2032007337","https://openalex.org/W3000685722","https://openalex.org/W1884363728","https://openalex.org/W4253099099","https://openalex.org/W2901060953","https://openalex.org/W2899463504"],"abstract_inverted_index":{"Biomedical":[0],"named":[1],"entity":[2,47,59],"recognition,":[3],"an":[4,75],"important":[5],"step,":[6],"makes":[7],"preparation":[8],"for":[9,54,78],"extracting":[10],"information":[11],"from":[12,83],"biomedical":[13,24,36,46,58,62],"textual":[14],"resources.":[15],"This":[16],"paper":[17],"presents":[18],"a":[19,66,70],"hybrid":[20],"approach":[21,34,42],"to":[22],"recognize":[23],"entity,":[25],"which":[26],"includes":[27],"POS":[28],"(Part-of-Speech)":[29],"tagging,":[30],"rules-based":[31],"and":[32,64,74],"dictionary-based":[33],"using":[35],"ontology.":[37],"Experiment":[38],"results":[39],"show":[40],"our":[41],"can":[43],"find":[44],"untagged":[45],"name":[48],"in":[49,60],"the":[50,61,79,84],"GENIA":[51,85],"3.02":[52,86],"corpus":[53],"aiding":[55],"biologist":[56],"tagging":[57],"literature":[63],"obtain":[65],"recall":[67],"of":[68,72],"66%,":[69],"precision":[71],"78%":[73],"F-score":[76],"71.5%":[77],"test":[80],"dataset":[81],"extracted":[82],"corpus.":[87]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}