{"id":"https://openalex.org/W2086237842","doi":"https://doi.org/10.1109/biovis.2013.6664351","title":"Leveraging wall-sized high-resolution displays for comparative genomics analyses of copy number variation","display_name":"Leveraging wall-sized high-resolution displays for comparative genomics analyses of copy number variation","publication_year":2013,"publication_date":"2013-10-01","ids":{"openalex":"https://openalex.org/W2086237842","doi":"https://doi.org/10.1109/biovis.2013.6664351","mag":"2086237842"},"language":"en","primary_location":{"id":"doi:10.1109/biovis.2013.6664351","is_oa":false,"landing_page_url":"https://doi.org/10.1109/biovis.2013.6664351","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Symposium on Biological Data Visualization (BioVis)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025082043","display_name":"Roy A. Ruddle","orcid":"https://orcid.org/0000-0001-8662-8103"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Roy A. Ruddle","raw_affiliation_strings":["School of Computing","Sch. of Comput., Univ. of Leeds, Leeds, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing","institution_ids":[]},{"raw_affiliation_string":"Sch. of Comput., Univ. of Leeds, Leeds, UK#TAB#","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040856443","display_name":"W Fateen","orcid":null},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Waleed Fateen","raw_affiliation_strings":["Leeds Institute of Cancer Studies & Pathology, University of Leeds, Leeds, UK","Leeds Institute of Cancer Studies and Pathology, University of Leeds, Leeds, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leeds Institute of Cancer Studies & Pathology, University of Leeds, Leeds, UK","institution_ids":["https://openalex.org/I130828816"]},{"raw_affiliation_string":"Leeds Institute of Cancer Studies and Pathology, University of Leeds, Leeds, UK","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001235418","display_name":"Darren Treanor","orcid":"https://orcid.org/0000-0002-4579-484X"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]},{"id":"https://openalex.org/I2801331674","display_name":"St James's University Hospital","ror":"https://ror.org/013s89d74","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799390153","https://openalex.org/I2801331674"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Darren Treanor","raw_affiliation_strings":["St. James's University Hospital, NHS Trust, Leeds, UK","Leeds Institute of Cancer Studies and Pathology, University of Leeds, Leeds, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"St. James's University Hospital, NHS Trust, Leeds, UK","institution_ids":["https://openalex.org/I2801331674"]},{"raw_affiliation_string":"Leeds Institute of Cancer Studies and Pathology, University of Leeds, Leeds, UK","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064684972","display_name":"Peter Sondergeld","orcid":"https://orcid.org/0000-0001-5092-2685"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter Sondergeld","raw_affiliation_strings":["University of Leeds, Leeds, West Yorkshire, GB","Sch. of Comput., Univ. of Leeds, Leeds, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Leeds, Leeds, West Yorkshire, GB","institution_ids":["https://openalex.org/I130828816"]},{"raw_affiliation_string":"Sch. of Comput., Univ. of Leeds, Leeds, UK#TAB#","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052092179","display_name":"Phil Ouirke","orcid":null},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Phil Ouirke","raw_affiliation_strings":["University of Leeds, Leeds, West Yorkshire, GB","Leeds Institute of Cancer Studies and Pathology, University of Leeds, Leeds, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Leeds, Leeds, West Yorkshire, GB","institution_ids":["https://openalex.org/I130828816"]},{"raw_affiliation_string":"Leeds Institute of Cancer Studies and Pathology, University of Leeds, Leeds, UK","institution_ids":["https://openalex.org/I130828816"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7375,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.71581182,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"24","issue":null,"first_page":"89","last_page":"96"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9715999960899353,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7650680541992188},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6805757880210876},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6546125411987305},{"id":"https://openalex.org/keywords/software-visualization","display_name":"Software visualization","score":0.6182210445404053},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5390247106552124},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5242305397987366},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4656579792499542},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4217658042907715},{"id":"https://openalex.org/keywords/pixel","display_name":"Pixel","score":0.4114392399787903},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3294166028499603},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.24408838152885437},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.14727938175201416},{"id":"https://openalex.org/keywords/software-construction","display_name":"Software construction","score":0.13686275482177734}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7650680541992188},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6805757880210876},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6546125411987305},{"id":"https://openalex.org/C4379982","wikidata":"https://www.wikidata.org/wiki/Q1273511","display_name":"Software visualization","level":5,"score":0.6182210445404053},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5390247106552124},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5242305397987366},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4656579792499542},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4217658042907715},{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.4114392399787903},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3294166028499603},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.24408838152885437},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.14727938175201416},{"id":"https://openalex.org/C186846655","wikidata":"https://www.wikidata.org/wiki/Q3398377","display_name":"Software construction","level":4,"score":0.13686275482177734},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/biovis.2013.6664351","is_oa":false,"landing_page_url":"https://doi.org/10.1109/biovis.2013.6664351","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Symposium on Biological Data Visualization (BioVis)","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.whiterose.ac.uk:79191","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Proceedings Paper"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.432.1065","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.432.1065","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.comp.leeds.ac.uk/royr/publications/ruddle-IEEE-BioVis-2013.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W110081802","https://openalex.org/W1506965148","https://openalex.org/W1523378720","https://openalex.org/W1823329909","https://openalex.org/W1973787390","https://openalex.org/W1990095531","https://openalex.org/W1993159344","https://openalex.org/W2003991267","https://openalex.org/W2021341670","https://openalex.org/W2024290096","https://openalex.org/W2025672124","https://openalex.org/W2037080265","https://openalex.org/W2039221169","https://openalex.org/W2040352438","https://openalex.org/W2071775391","https://openalex.org/W2079044346","https://openalex.org/W2090556242","https://openalex.org/W2112706474","https://openalex.org/W2122769974","https://openalex.org/W2128016314","https://openalex.org/W2137359451","https://openalex.org/W2142972337","https://openalex.org/W2145373803","https://openalex.org/W2155123448","https://openalex.org/W2155643678","https://openalex.org/W2157445661","https://openalex.org/W2158804744","https://openalex.org/W2159678947","https://openalex.org/W2161540075","https://openalex.org/W2166172711","https://openalex.org/W2287868938","https://openalex.org/W2527276559","https://openalex.org/W4245403358","https://openalex.org/W6631184376","https://openalex.org/W6682736930","https://openalex.org/W6683583651","https://openalex.org/W6684357943"],"related_works":["https://openalex.org/W3135697610","https://openalex.org/W2085033728","https://openalex.org/W4285411112","https://openalex.org/W2171299904","https://openalex.org/W1647606319","https://openalex.org/W2922442631","https://openalex.org/W4390494008","https://openalex.org/W4293280164","https://openalex.org/W2127156638","https://openalex.org/W171991278"],"abstract_inverted_index":{"The":[0,45,100],"scale":[1],"of":[2,21,26,34,53,74],"comparative":[3,140],"genomics":[4,141],"data":[5,9,134,168],"frequently":[6],"overwhelms":[7],"current":[8],"visualization":[10,104,142],"methods":[11],"on":[12],"conventional":[13],"(desktop)":[14],"displays.":[15,44],"This":[16],"paper":[17],"describes":[18],"two":[19],"types":[20],"solution":[22],"that":[23,58,77,90,106,144],"take":[24],"advantage":[25],"wall-sized":[27],"high-resolution":[28],"displays":[29],"(WHirDs),":[30],"which":[31],"have":[32],"orders":[33],"magnitude":[35],"more":[36],"display":[37],"real":[38,151],"estate":[39],"(i.e.,":[40],"pixels)":[41],"than":[42],"desktop":[43],"first":[46,139],"allows":[47],"users":[48,81],"to":[49,82,116,131,147,181],"view":[50],"detailed":[51],"graphics":[52],"copy":[54],"number":[55],"variation":[56],"(CNV)":[57],"were":[59],"output":[60,76],"by":[61,126,178],"existing":[62],"software.":[63],"A":[64],"WHirD's":[65,150],"resolution":[66],"allowed":[67],"a":[68,88,112,122,149,154,157,161],"10x":[69],"increase":[70],"in":[71,164,175,186],"the":[72,97,138,165,176],"granularity":[73],"bioinformatics":[75],"was":[78,107],"feasible":[79],"for":[80],"visually":[83],"analyze,":[84],"and":[85,136,172],"this":[86],"revealed":[87],"pattern":[89],"had":[91,169],"previously":[92],"been":[93,170],"smoothed":[94],"out":[95,118],"from":[96],"underlying":[98],"data.":[99],"second":[101],"involved":[102],"interactive":[103],"software":[105,143,177],"innovative":[108],"because":[109],"it":[110,180],"uses":[111,129],"music":[113],"score":[114],"metaphor":[115],"lay":[117],"CNV":[119],"data,":[120],"overcomes":[121],"perceptual":[123],"distortion":[124],"caused":[125],"amplification/deletion":[127],"thresholds,":[128],"filtering":[130],"reduce":[132],"graphical":[133],"overload,":[135],"is":[137,145],"designed":[146],"leverage":[148],"estate.":[152],"In":[153],"field":[155],"evaluation,":[156],"clinical":[158],"user":[159],"discovered":[160],"fundamental":[162],"error":[163],"way":[166],"their":[167],"processed,":[171],"established":[173],"confidence":[174],"using":[179],"\u2018find\u2019":[182],"known":[183],"genetic":[184],"patterns":[185],"hepatitis":[187],"C-driven":[188],"hepatocellular":[189],"cancer.":[190]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
