{"id":"https://openalex.org/W2098469982","doi":"https://doi.org/10.1109/biovis.2013.6664342","title":"COMBat: Visualizing co-occurrence of annotation terms","display_name":"COMBat: Visualizing co-occurrence of annotation terms","publication_year":2013,"publication_date":"2013-10-01","ids":{"openalex":"https://openalex.org/W2098469982","doi":"https://doi.org/10.1109/biovis.2013.6664342","mag":"2098469982"},"language":"en","primary_location":{"id":"doi:10.1109/biovis.2013.6664342","is_oa":false,"landing_page_url":"https://doi.org/10.1109/biovis.2013.6664342","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Symposium on Biological Data Visualization (BioVis)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047419573","display_name":"Remko B. J. van Brakel","orcid":null},"institutions":[{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Remko B. J. van Brakel","raw_affiliation_strings":["Eindhoven University of Technology","EINDHOVEN UNIVERSITY OF TECHNOLOGY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Eindhoven University of Technology","institution_ids":["https://openalex.org/I83019370"]},{"raw_affiliation_string":"EINDHOVEN UNIVERSITY OF TECHNOLOGY","institution_ids":["https://openalex.org/I83019370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034468026","display_name":"Mark Fiers","orcid":"https://orcid.org/0000-0001-5694-2409"},"institutions":[{"id":"https://openalex.org/I103855431","display_name":"HAN University of Applied Sciences","ror":"https://ror.org/0500gea42","country_code":"NL","type":"education","lineage":["https://openalex.org/I103855431"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE","NL"],"is_corresponding":false,"raw_author_name":"Mark W. E. J. Fiers","raw_affiliation_strings":["HAN University of Applied Sciences, Nijmegen","Center for the Biology of Disease, VIB Leuven;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HAN University of Applied Sciences, Nijmegen","institution_ids":["https://openalex.org/I103855431"]},{"raw_affiliation_string":"Center for the Biology of Disease, VIB Leuven;","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026659504","display_name":"Christof Francke","orcid":"https://orcid.org/0000-0002-1539-6576"},"institutions":[{"id":"https://openalex.org/I103855431","display_name":"HAN University of Applied Sciences","ror":"https://ror.org/0500gea42","country_code":"NL","type":"education","lineage":["https://openalex.org/I103855431"]},{"id":"https://openalex.org/I4210092815","display_name":"VIB-KU Leuven Center for Cancer Biology","ror":"https://ror.org/00eyng893","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I4210092815","https://openalex.org/I99464096"]}],"countries":["BE","NL"],"is_corresponding":false,"raw_author_name":"Christof Francke","raw_affiliation_strings":["Center for the Biology of Disease (VIB), Leuven","HAN University of Applied Sciences, Nijmegen"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for the Biology of Disease (VIB), Leuven","institution_ids":["https://openalex.org/I4210092815"]},{"raw_affiliation_string":"HAN University of Applied Sciences, Nijmegen","institution_ids":["https://openalex.org/I103855431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039489539","display_name":"Michel A. Westenberg","orcid":"https://orcid.org/0000-0003-4355-7805"},"institutions":[{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Michel A. Westenberg","raw_affiliation_strings":["Eindhoven University of Technology","EINDHOVEN UNIVERSITY OF TECHNOLOGY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Eindhoven University of Technology","institution_ids":["https://openalex.org/I83019370"]},{"raw_affiliation_string":"EINDHOVEN UNIVERSITY OF TECHNOLOGY","institution_ids":["https://openalex.org/I83019370"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025297422","display_name":"Huub van de Wetering","orcid":"https://orcid.org/0000-0002-0517-1322"},"institutions":[{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Huub van de Wetering","raw_affiliation_strings":["Eindhoven University of Technology","EINDHOVEN UNIVERSITY OF TECHNOLOGY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Eindhoven University of Technology","institution_ids":["https://openalex.org/I83019370"]},{"raw_affiliation_string":"EINDHOVEN UNIVERSITY OF TECHNOLOGY","institution_ids":["https://openalex.org/I83019370"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4156,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.62523165,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"41","issue":null,"first_page":"17","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9745000004768372,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7481676340103149},{"id":"https://openalex.org/keywords/row","display_name":"Row","score":0.7453575134277344},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7296625375747681},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7076833248138428},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.611364483833313},{"id":"https://openalex.org/keywords/on-the-fly","display_name":"On the fly","score":0.575659990310669},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.5537689924240112},{"id":"https://openalex.org/keywords/row-and-column-spaces","display_name":"Row and column spaces","score":0.5200309753417969},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5163084864616394},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5063081979751587},{"id":"https://openalex.org/keywords/column","display_name":"Column (typography)","score":0.4672560393810272},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.457663357257843},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.447085440158844},{"id":"https://openalex.org/keywords/color-coding","display_name":"Color-coding","score":0.4331004023551941},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3970141112804413},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35398149490356445},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34541013836860657},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12516766786575317},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10334229469299316},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09251299500465393},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08860406279563904}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7481676340103149},{"id":"https://openalex.org/C135598885","wikidata":"https://www.wikidata.org/wiki/Q1366302","display_name":"Row","level":2,"score":0.7453575134277344},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7296625375747681},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7076833248138428},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.611364483833313},{"id":"https://openalex.org/C2781020372","wikidata":"https://www.wikidata.org/wiki/Q533093","display_name":"On the fly","level":2,"score":0.575659990310669},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.5537689924240112},{"id":"https://openalex.org/C104140500","wikidata":"https://www.wikidata.org/wiki/Q2088159","display_name":"Row and column spaces","level":3,"score":0.5200309753417969},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5163084864616394},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5063081979751587},{"id":"https://openalex.org/C2780551164","wikidata":"https://www.wikidata.org/wiki/Q2306599","display_name":"Column (typography)","level":3,"score":0.4672560393810272},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.457663357257843},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.447085440158844},{"id":"https://openalex.org/C104597421","wikidata":"https://www.wikidata.org/wiki/Q5148529","display_name":"Color-coding","level":2,"score":0.4331004023551941},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3970141112804413},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35398149490356445},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34541013836860657},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12516766786575317},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10334229469299316},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09251299500465393},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08860406279563904},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C126042441","wikidata":"https://www.wikidata.org/wiki/Q1324888","display_name":"Frame (networking)","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/biovis.2013.6664342","is_oa":false,"landing_page_url":"https://doi.org/10.1109/biovis.2013.6664342","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Symposium on Biological Data Visualization (BioVis)","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.tue.nl:openaire_cris_publications/6260927c-d75a-49b3-9db4-488587a207eb","is_oa":false,"landing_page_url":"https://research.tue.nl/en/publications/6260927c-d75a-49b3-9db4-488587a207eb","pdf_url":null,"source":{"id":"https://openalex.org/S4406922641","display_name":"TU/e Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:tue:oai:pure.tue.nl:publications/6260927c-d75a-49b3-9db4-488587a207eb","is_oa":false,"landing_page_url":"https://research.tue.nl/nl/publications/6260927c-d75a-49b3-9db4-488587a207eb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2013 IEEE Symposium on Biological Data Visualization (BioVis, Atlanta GA, USA, October 13-14, 2013), 17 - 24","raw_type":"info:eu-repo/semantics/conferencepaper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W93405014","https://openalex.org/W1490137556","https://openalex.org/W1556105006","https://openalex.org/W1588957466","https://openalex.org/W1972863608","https://openalex.org/W1980073965","https://openalex.org/W1992003822","https://openalex.org/W2012331775","https://openalex.org/W2018527742","https://openalex.org/W2032950184","https://openalex.org/W2038753534","https://openalex.org/W2050427657","https://openalex.org/W2060454056","https://openalex.org/W2074494141","https://openalex.org/W2100827887","https://openalex.org/W2103017472","https://openalex.org/W2105924489","https://openalex.org/W2108811504","https://openalex.org/W2121323163","https://openalex.org/W2128601422","https://openalex.org/W2128712108","https://openalex.org/W2130956021","https://openalex.org/W2140541004","https://openalex.org/W2141885858","https://openalex.org/W2150926065","https://openalex.org/W2155606054","https://openalex.org/W2159482845","https://openalex.org/W2160763289","https://openalex.org/W2160854065","https://openalex.org/W2342204193","https://openalex.org/W2605068739","https://openalex.org/W4211090384","https://openalex.org/W4233060585","https://openalex.org/W4239183290","https://openalex.org/W4255938757","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W3121299875","https://openalex.org/W3123744736","https://openalex.org/W1566754092","https://openalex.org/W2392826917","https://openalex.org/W2591708697","https://openalex.org/W5848937","https://openalex.org/W1649057478","https://openalex.org/W2118333177","https://openalex.org/W4239183290","https://openalex.org/W2098469982"],"abstract_inverted_index":{"We":[0,110],"propose":[1],"a":[2,8,37,46,86,115],"visual":[3],"analysis":[4],"approach":[5,113],"that":[6],"employs":[7],"matrix-based":[9],"visualization":[10],"technique":[11],"to":[12,28,84],"explore":[13],"relations":[14],"between":[15,125],"annotation":[16],"terms":[17],"in":[18,36,42],"biological":[19],"data":[20,32],"sets.":[21],"Our":[22,78],"flexible":[23],"framework":[24],"provides":[25,106],"various":[26],"ways":[27],"form":[29],"combinations":[30],"of":[31,48,54,67,95,97,122,128],"elements,":[33],"which":[34],"results":[35],"co-occurrence":[38],"matrix.":[39],"Each":[40],"cell":[41,73],"this":[43,68],"matrix":[44,88],"stores":[45],"list":[47],"items":[49,96],"associated":[50],"with":[51,114],"the":[52,55,63,72,90,120,126],"combination":[53],"corresponding":[56],"row":[57],"and":[58,65,70,104,134],"column":[59],"element.":[60],"By":[61],"re-arranging":[62],"rows":[64],"columns":[66],"matrix,":[69],"color-coding":[71],"contents,":[74],"patterns":[75],"become":[76],"visible.":[77],"prototype":[79],"tool":[80],"COMBat":[81],"allows":[82],"users":[83],"construct":[85],"new":[87],"on":[89],"fly":[91],"by":[92],"selecting":[93],"subsets":[94],"interest,":[98],"or":[99,131],"filtering":[100],"out":[101],"uninteresting":[102],"ones,":[103],"it":[105],"variousadditional":[107],"interaction":[108],"techniques.":[109],"illustrate":[111],"our":[112],"few":[116],"case":[117],"studies":[118],"concerning":[119],"identification":[121],"functional":[123],"links":[124],"presence":[127],"particular":[129,135],"genes":[130],"genomic":[132],"sequences":[133],"cellular":[136],"processes.":[137]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
