{"id":"https://openalex.org/W2037746522","doi":"https://doi.org/10.1109/biovis.2012.6378600","title":"enRoute: Dynamic path extraction from biological pathway maps for in-depth experimental data analysis","display_name":"enRoute: Dynamic path extraction from biological pathway maps for in-depth experimental data analysis","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2037746522","doi":"https://doi.org/10.1109/biovis.2012.6378600","mag":"2037746522"},"language":"en","primary_location":{"id":"doi:10.1109/biovis.2012.6378600","is_oa":false,"landing_page_url":"https://doi.org/10.1109/biovis.2012.6378600","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Symposium on Biological Data Visualization (BioVis)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003116261","display_name":"Christian Partl","orcid":"https://orcid.org/0009-0005-4039-3392"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Christian Partl","raw_affiliation_strings":["Graz University of Technology, Austria"],"affiliations":[{"raw_affiliation_string":"Graz University of Technology, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031057530","display_name":"Alexander Lex","orcid":"https://orcid.org/0000-0001-6930-5468"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Alexander Lex","raw_affiliation_strings":["Graz University of Technology"],"affiliations":[{"raw_affiliation_string":"Graz University of Technology","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042080340","display_name":"Marc Streit","orcid":"https://orcid.org/0000-0001-9186-2092"},"institutions":[{"id":"https://openalex.org/I121883995","display_name":"Johannes Kepler University of Linz","ror":"https://ror.org/052r2xn60","country_code":"AT","type":"education","lineage":["https://openalex.org/I121883995"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Marc Streit","raw_affiliation_strings":["Johannes Kepler University Linz"],"affiliations":[{"raw_affiliation_string":"Johannes Kepler University Linz","institution_ids":["https://openalex.org/I121883995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031236945","display_name":"Denis Kalkofen","orcid":"https://orcid.org/0000-0002-0359-206X"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Denis Kalkofen","raw_affiliation_strings":["Graz University of Technology, Austria"],"affiliations":[{"raw_affiliation_string":"Graz University of Technology, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037132971","display_name":"Karl Kashofer","orcid":"https://orcid.org/0000-0002-5803-4014"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Karl Kashofer","raw_affiliation_strings":["Medical University of Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Medical University of Graz, Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048047909","display_name":"Dieter Schmalstieg","orcid":"https://orcid.org/0000-0003-2813-2235"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Dieter Schmalstieg","raw_affiliation_strings":["Graz University of Technology, Austria"],"affiliations":[{"raw_affiliation_string":"Graz University of Technology, Austria","institution_ids":["https://openalex.org/I4092182"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5003116261"],"corresponding_institution_ids":["https://openalex.org/I4092182"],"apc_list":null,"apc_paid":null,"fwci":1.182,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.77199468,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"107","last_page":"114"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7532899975776672},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.5324374437332153},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.515900731086731},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40424031019210815},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2040899097919464},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.100789874792099}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7532899975776672},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.5324374437332153},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.515900731086731},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40424031019210815},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2040899097919464},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.100789874792099},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/biovis.2012.6378600","is_oa":false,"landing_page_url":"https://doi.org/10.1109/biovis.2012.6378600","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Symposium on Biological Data Visualization (BioVis)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320326239","display_name":"Medizinische Universit\u00e4t Graz","ror":"https://ror.org/02n0bts35"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1946371345","https://openalex.org/W1980680329","https://openalex.org/W1983359980","https://openalex.org/W1984418041","https://openalex.org/W2005773722","https://openalex.org/W2023098599","https://openalex.org/W2091789479","https://openalex.org/W2103963076","https://openalex.org/W2105528101","https://openalex.org/W2107139603","https://openalex.org/W2111495777","https://openalex.org/W2119494621","https://openalex.org/W2123060905","https://openalex.org/W2125748785","https://openalex.org/W2132881639","https://openalex.org/W2133298156","https://openalex.org/W2138199375","https://openalex.org/W2142913541","https://openalex.org/W2144333758","https://openalex.org/W2147053292","https://openalex.org/W2152621157","https://openalex.org/W2155405213","https://openalex.org/W2156424362","https://openalex.org/W2157348185","https://openalex.org/W2159147775","https://openalex.org/W2159521238","https://openalex.org/W2159675211","https://openalex.org/W2161289668","https://openalex.org/W2162601703","https://openalex.org/W2227557434","https://openalex.org/W6678642643"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W1964572291","https://openalex.org/W184793361","https://openalex.org/W2352732738","https://openalex.org/W2123060905","https://openalex.org/W2559588208","https://openalex.org/W4318778067","https://openalex.org/W2347219288","https://openalex.org/W2366221835"],"abstract_inverted_index":{"Pathway":[0],"maps":[1],"are":[2,85,157,162],"an":[3,92],"important":[4,135],"source":[5],"of":[6,12,22,46,104,114,117,127,137,147,219],"information":[7],"when":[8],"analyzing":[9],"functional":[10],"implications":[11],"experimental":[13,80,97,118],"data":[14,23,81,105,210],"on":[15,26],"biological":[16],"processes.":[17],"However,":[18],"associating":[19],"large":[20,102],"quantities":[21],"with":[24,96,144,154,172,191,202],"nodes":[25],"a":[27,39,43,58,74,128,217],"pathway":[28,66,108,167],"map":[29],"and":[30,120,179,189,216],"allowing":[31],"in":[32,164,214,221],"depth-analysis":[33],"at":[34,130],"the":[35,65,131,175],"same":[36,132],"time":[37],"is":[38,140],"challenging":[40],"task.":[41],"While":[42],"wide":[44],"variety":[45],"approaches":[47],"for":[48,77,106,211],"doing":[49],"so":[50],"exist,":[51],"they":[52,161],"either":[53],"do":[54],"not":[55],"scale":[56],"beyond":[57],"few":[59],"experiments":[60],"or":[61],"fail":[62],"to":[63,208],"represent":[64],"appropriately.":[67],"To":[68],"remedy":[69],"this,":[70],"we":[71],"introduce":[72],"enRoute,":[73],"new":[75],"approach":[76,139],"interactively":[78],"exploring":[79],"along":[82],"paths":[83],"that":[84,156],"dynamically":[86],"extracted":[87,93],"from":[88,174,187],"pathways.":[89,148],"By":[90],"showing":[91],"path":[94],"side-by-side":[95],"data,":[98],"enRoute":[99,151,171,198,207],"can":[100,111],"present":[101],"amounts":[103],"every":[107],"node.":[109],"It":[110],"visualize":[112],"hundreds":[113],"samples,":[115],"dozens":[116],"conditions,":[119],"even":[121],"multiple":[122],"datasets":[123,186],"capturing":[124],"different":[125],"aspects":[126],"node":[129],"time.":[133],"Another":[134],"property":[136],"this":[138],"its":[141],"conceptual":[142],"compatibility":[143],"arbitrary":[145],"forms":[146],"Most":[149],"notably,":[150],"works":[152],"well":[153,182],"pathways":[155,173],"manually":[158],"created,":[159],"as":[160,181,183],"available":[163],"large,":[165],"public":[166],"databases.":[168],"We":[169,196],"demonstrate":[170],"well-established":[176],"KEGG":[177],"database":[178],"expression":[180],"copy":[184],"number":[185],"humans":[188,215],"mice":[190],"more":[192],"than":[193],"1,000":[194],"experiments.":[195],"validate":[197],"using":[199],"case":[200],"studies":[201],"domain":[203],"experts,":[204],"who":[205],"used":[206],"explore":[209],"glioblastoma":[212],"multiforme":[213],"model":[218],"steatohepatitis":[220],"mice.":[222]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
