{"id":"https://openalex.org/W2065987416","doi":"https://doi.org/10.1109/biovis.2011.6094046","title":"The Galaxy Track Browser: Transforming the genome browser from visualization tool to analysis tool","display_name":"The Galaxy Track Browser: Transforming the genome browser from visualization tool to analysis tool","publication_year":2011,"publication_date":"2011-10-01","ids":{"openalex":"https://openalex.org/W2065987416","doi":"https://doi.org/10.1109/biovis.2011.6094046","mag":"2065987416"},"language":"en","primary_location":{"id":"doi:10.1109/biovis.2011.6094046","is_oa":false,"landing_page_url":"https://doi.org/10.1109/biovis.2011.6094046","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Symposium on Biological Data Visualization (BioVis).","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031069551","display_name":"Jeremy Goecks","orcid":"https://orcid.org/0000-0002-4583-5226"},"institutions":[{"id":"https://openalex.org/I4210122084","display_name":"Galaxy Biotech (United States)","ror":"https://ror.org/031evws22","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122084"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jeremy Goecks","raw_affiliation_strings":["The Galaxy Project Emory University, USA"],"affiliations":[{"raw_affiliation_string":"The Galaxy Project Emory University, USA","institution_ids":["https://openalex.org/I4210122084","https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075000616","display_name":"Kanwei Li","orcid":null},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I4210122084","display_name":"Galaxy Biotech (United States)","ror":"https://ror.org/031evws22","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122084"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kanwei Li","raw_affiliation_strings":["The Galaxy Project Emory University, USA"],"affiliations":[{"raw_affiliation_string":"The Galaxy Project Emory University, USA","institution_ids":["https://openalex.org/I4210122084","https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019027500","display_name":"Dave Clements","orcid":"https://orcid.org/0000-0002-9970-6657"},"institutions":[{"id":"https://openalex.org/I4210122084","display_name":"Galaxy Biotech (United States)","ror":"https://ror.org/031evws22","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122084"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dave Clements","raw_affiliation_strings":["The Galaxy Project Emory University, USA"],"affiliations":[{"raw_affiliation_string":"The Galaxy Project Emory University, USA","institution_ids":["https://openalex.org/I4210122084","https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105235386","display_name":"The Galaxy Team","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"The Galaxy Team","raw_affiliation_strings":["The Galaxy Project, USA"],"affiliations":[{"raw_affiliation_string":"The Galaxy Project, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025611053","display_name":"James Taylor","orcid":"https://orcid.org/0000-0001-5079-840X"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Taylor","raw_affiliation_strings":["The Galaxy Project Emory University"],"affiliations":[{"raw_affiliation_string":"The Galaxy Project Emory University","institution_ids":["https://openalex.org/I150468666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5031069551"],"corresponding_institution_ids":["https://openalex.org/I150468666","https://openalex.org/I4210122084"],"apc_list":null,"apc_paid":null,"fwci":0.2606,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.57796098,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"27","issue":null,"first_page":"39","last_page":"46"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7996692657470703},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7543990612030029},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.5627463459968567},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5541179776191711},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.49233758449554443},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4783858060836792},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.466714084148407},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4435041546821594},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4168851971626282},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.33031952381134033},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19104793667793274},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.18275150656700134},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09693554043769836}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7996692657470703},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7543990612030029},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.5627463459968567},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5541179776191711},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.49233758449554443},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4783858060836792},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.466714084148407},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4435041546821594},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4168851971626282},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.33031952381134033},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19104793667793274},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.18275150656700134},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09693554043769836},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/biovis.2011.6094046","is_oa":false,"landing_page_url":"https://doi.org/10.1109/biovis.2011.6094046","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Symposium on Biological Data Visualization (BioVis).","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1594453896","https://openalex.org/W1968475238","https://openalex.org/W1977859620","https://openalex.org/W1981509058","https://openalex.org/W1990095531","https://openalex.org/W2021341670","https://openalex.org/W2022406334","https://openalex.org/W2097065948","https://openalex.org/W2103903744","https://openalex.org/W2108234281","https://openalex.org/W2113565103","https://openalex.org/W2119180969","https://openalex.org/W2120414630","https://openalex.org/W2124985265","https://openalex.org/W2128016314","https://openalex.org/W2129785061","https://openalex.org/W2136145671","https://openalex.org/W2136482257","https://openalex.org/W2141458291","https://openalex.org/W2142386149","https://openalex.org/W2145477956","https://openalex.org/W2148683465","https://openalex.org/W2152710395","https://openalex.org/W2158304452","https://openalex.org/W2161645441","https://openalex.org/W2167033647","https://openalex.org/W2167155938","https://openalex.org/W2171808845","https://openalex.org/W2415579990","https://openalex.org/W4210450218","https://openalex.org/W4254040930"],"related_works":["https://openalex.org/W3180179400","https://openalex.org/W2118366689","https://openalex.org/W2154998455","https://openalex.org/W2116888309","https://openalex.org/W2477652530","https://openalex.org/W2039055059","https://openalex.org/W2381088774","https://openalex.org/W2281900275","https://openalex.org/W2183494409","https://openalex.org/W963721989"],"abstract_inverted_index":{"The":[0,43],"proliferation":[1],"of":[2],"next-generation":[3],"sequencing":[4],"(NGS)":[5],"technologies":[6],"and":[7,33,36,95,103,121,124,141,149,162],"analysis":[8,24],"tools":[9,25,105],"present":[10],"new":[11,108],"challenges":[12,17],"to":[13,29,69,91,106,128],"genome":[14,51,67,151],"browsers.":[15],"These":[16],"include":[18],"supporting":[19],"very":[20,83],"large":[21,84],"datasets,":[22],"integrating":[23],"with":[26,160],"data":[27,74,80,93,96,123,130],"visualization":[28,94],"help":[30],"reason":[31],"about":[32],"improve":[34],"analyses,":[35],"sharing":[37],"or":[38],"publishing":[39],"fully":[40],"interactive":[41,116,154],"visualizations.":[42],"Galaxy":[44,56,89,139],"Track":[45],"Browser":[46],"(GTB)":[47],"is":[48,63,135],"a":[49,71,168],"Web-based":[50,66],"browser":[52,68],"integrated":[53],"into":[54],"the":[55,64,88,165],"platform":[57,90],"that":[58,118],"addresses":[59],"these":[60],"challenges.":[61],"GTB":[62,86,113,134,155],"first":[65],"provide":[70],"full":[72],"multi-resolution":[73],"model;":[75],"this":[76],"model":[77],"supports":[78],"efficient":[79],"retrieval":[81],"from":[82],"datasets.":[85],"leverages":[87],"combine":[92],"analysis;":[97],"users":[98],"can":[99,125,143,157],"specify":[100],"parameter":[101],"values":[102],"run":[104],"produce":[107],"data,":[109],"all":[110],"within":[111],"GTB.":[112],"also":[114],"provides":[115],"filters":[117],"dynamically":[119],"show":[120],"hide":[122],"be":[126,144,158],"used":[127],"identify":[129],"for":[131,146],"further":[132],"investigation.":[133],"available":[136],"on":[137,164],"every":[138],"server,":[140],"visualizations":[142,156],"created":[145],"both":[147],"standard":[148],"custom":[150],"builds.":[152],"Fully":[153],"shared":[159],"colleagues":[161],"published":[163],"Web":[166],"using":[167],"simple":[169],"graphical":[170],"user":[171],"interface.":[172]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
