{"id":"https://openalex.org/W7134189756","doi":"https://doi.org/10.1109/bigdata66926.2025.11402087","title":"Accelerating Causal Network Discovery of Alzheimer's Disease Biomarkers via Scientific Literature-Based Retrieval Augmented Generation","display_name":"Accelerating Causal Network Discovery of Alzheimer's Disease Biomarkers via Scientific Literature-Based Retrieval Augmented Generation","publication_year":2025,"publication_date":"2025-12-08","ids":{"openalex":"https://openalex.org/W7134189756","doi":"https://doi.org/10.1109/bigdata66926.2025.11402087"},"language":null,"primary_location":{"id":"doi:10.1109/bigdata66926.2025.11402087","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata66926.2025.11402087","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Big Data (BigData)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072993063","display_name":"Xiaofan Zhou","orcid":"https://orcid.org/0009-0007-4160-4715"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaofan Zhou","raw_affiliation_strings":["University of Illinois Chicago,Computer Science,Chicago,IL,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Illinois Chicago,Computer Science,Chicago,IL,USA","institution_ids":["https://openalex.org/I39422238","https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5119013469","display_name":"Lv Huang","orcid":"https://orcid.org/0000-0003-4957-0306"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liangjie Huang","raw_affiliation_strings":["University of Illinois Chicago,Computer Science,Chicago,IL,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Illinois Chicago,Computer Science,Chicago,IL,USA","institution_ids":["https://openalex.org/I39422238","https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009177731","display_name":"Pinyang Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pinyang Chen","raw_affiliation_strings":["Pennsylvania State University,Mathematics,State College,PA,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pennsylvania State University,Mathematics,State College,PA,USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128228227","display_name":"Wenpeng Yin","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenpeng Yin","raw_affiliation_strings":["Pennsylvania State University,Computer Science,State College,PA,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pennsylvania State University,Computer Science,State College,PA,USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073388270","display_name":"R. Zhang","orcid":"https://orcid.org/0000-0002-7900-7373"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rui Zhang","raw_affiliation_strings":["Pennsylvania State University,Computer Science,State College,PA,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pennsylvania State University,Computer Science,State College,PA,USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052752785","display_name":"Wenrui Hao","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenrui Hao","raw_affiliation_strings":["Pennsylvania State University,Mathematics,State College,PA,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pennsylvania State University,Mathematics,State College,PA,USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5128356384","display_name":"Lu Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lu Cheng","raw_affiliation_strings":["University of Illinois Chicago,Computer Science,Chicago,IL,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Illinois Chicago,Computer Science,Chicago,IL,USA","institution_ids":["https://openalex.org/I39422238","https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.84624858,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"3335","last_page":"3344"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6021000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6021000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.17579999566078186,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.07829999923706055,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4120999872684479},{"id":"https://openalex.org/keywords/proteogenomics","display_name":"Proteogenomics","score":0.3400999903678894},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.3346000015735626},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.2896000146865845},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.28690001368522644}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5950999855995178},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4120999872684479},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3887999951839447},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38089999556541443},{"id":"https://openalex.org/C145741570","wikidata":"https://www.wikidata.org/wiki/Q7251534","display_name":"Proteogenomics","level":5,"score":0.3400999903678894},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.3346000015735626},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30160000920295715},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.2896000146865845},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.28690001368522644},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.28679999709129333},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.27559998631477356},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2678999900817871},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.25929999351501465},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.2558000087738037}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bigdata66926.2025.11402087","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata66926.2025.11402087","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Big Data (BigData)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5642320712","display_name":"Collaborative Research: III:  Medium: Knowledge discovery from highly heterogeneous, sparse and private data in biomedical informatics","funder_award_id":"2312862","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5717765296","display_name":"SCH: Fair and Interpretable Prediction of Alzheimer's Disease and MCI using LLMs","funder_award_id":"1r01ag091762-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1975062332","https://openalex.org/W2049799298","https://openalex.org/W2552032209","https://openalex.org/W2617100036","https://openalex.org/W2952768073","https://openalex.org/W4287855110","https://openalex.org/W4295080549","https://openalex.org/W4385570161","https://openalex.org/W4388704148","https://openalex.org/W4389132751","https://openalex.org/W4389440046","https://openalex.org/W4389518895","https://openalex.org/W4389520249","https://openalex.org/W4389520670","https://openalex.org/W4389727268","https://openalex.org/W4400128031","https://openalex.org/W4401042444","https://openalex.org/W4402670862","https://openalex.org/W4406813548","https://openalex.org/W4409190866","https://openalex.org/W4411120331","https://openalex.org/W4412888838","https://openalex.org/W4412889782","https://openalex.org/W7133224126"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2026-03-09T00:00:00"}
