{"id":"https://openalex.org/W4406495723","doi":"https://doi.org/10.1109/bigdata62323.2024.10825504","title":"LOCOS: A cosine based local gene expression pattern finding algorithm on time-series data","display_name":"LOCOS: A cosine based local gene expression pattern finding algorithm on time-series data","publication_year":2024,"publication_date":"2024-12-15","ids":{"openalex":"https://openalex.org/W4406495723","doi":"https://doi.org/10.1109/bigdata62323.2024.10825504"},"language":"en","primary_location":{"id":"doi:10.1109/bigdata62323.2024.10825504","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata62323.2024.10825504","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Big Data (BigData)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106640060","display_name":"Youjeong Suk","orcid":null},"institutions":[{"id":"https://openalex.org/I31419693","display_name":"Kyungpook National University","ror":"https://ror.org/040c17130","country_code":"KR","type":"education","lineage":["https://openalex.org/I31419693"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Youjeong Suk","raw_affiliation_strings":["Kyungpook National University,School of Computer Science and Engineering,Daegu,Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Kyungpook National University,School of Computer Science and Engineering,Daegu,Republic of Korea","institution_ids":["https://openalex.org/I31419693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031076957","display_name":"Jaemin Jeon","orcid":null},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jaemin Jeon","raw_affiliation_strings":["Seoul National University,Interdisciplinary Program in Bioinformatics,Seoul,Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Seoul National University,Interdisciplinary Program in Bioinformatics,Seoul,Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004249952","display_name":"Inuk Jung","orcid":"https://orcid.org/0000-0003-0675-4244"},"institutions":[{"id":"https://openalex.org/I31419693","display_name":"Kyungpook National University","ror":"https://ror.org/040c17130","country_code":"KR","type":"education","lineage":["https://openalex.org/I31419693"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Inuk Jung","raw_affiliation_strings":["Kyungpook National University,School of Computer Science and Engineering,Daegu,Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Kyungpook National University,School of Computer Science and Engineering,Daegu,Republic of Korea","institution_ids":["https://openalex.org/I31419693"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5106640060"],"corresponding_institution_ids":["https://openalex.org/I31419693"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.23860487,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"4210","last_page":"4239"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6120826005935669},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.5817322134971619},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5304700136184692},{"id":"https://openalex.org/keywords/locos","display_name":"LOCOS","score":0.5195099115371704},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.4980182647705078},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4945690333843231},{"id":"https://openalex.org/keywords/trigonometric-functions","display_name":"Trigonometric functions","score":0.4327208697795868},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21085390448570251},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10951671004295349},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1000986397266388},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.08866265416145325},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08452510833740234},{"id":"https://openalex.org/keywords/silicon","display_name":"Silicon","score":0.08168792724609375}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6120826005935669},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.5817322134971619},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5304700136184692},{"id":"https://openalex.org/C195114451","wikidata":"https://www.wikidata.org/wiki/Q1798244","display_name":"LOCOS","level":4,"score":0.5195099115371704},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.4980182647705078},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4945690333843231},{"id":"https://openalex.org/C178009071","wikidata":"https://www.wikidata.org/wiki/Q93344","display_name":"Trigonometric functions","level":2,"score":0.4327208697795868},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21085390448570251},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10951671004295349},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1000986397266388},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.08866265416145325},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08452510833740234},{"id":"https://openalex.org/C544956773","wikidata":"https://www.wikidata.org/wiki/Q670","display_name":"Silicon","level":2,"score":0.08168792724609375},{"id":"https://openalex.org/C2777431650","wikidata":"https://www.wikidata.org/wiki/Q413828","display_name":"Silicon nitride","level":3,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C191897082","wikidata":"https://www.wikidata.org/wiki/Q11467","display_name":"Metallurgy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bigdata62323.2024.10825504","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata62323.2024.10825504","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Big Data (BigData)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320338440","display_name":"HORIZON EUROPE Health","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1536706018","https://openalex.org/W1829361182","https://openalex.org/W1902027874","https://openalex.org/W1993958608","https://openalex.org/W2029906306","https://openalex.org/W2059524588","https://openalex.org/W2061876104","https://openalex.org/W2075746486","https://openalex.org/W2101142880","https://openalex.org/W2141290377","https://openalex.org/W2150376021","https://openalex.org/W2579728701","https://openalex.org/W2763449827","https://openalex.org/W2944545583","https://openalex.org/W2988244882","https://openalex.org/W2989948873","https://openalex.org/W3012642346","https://openalex.org/W3021135130","https://openalex.org/W3033034878","https://openalex.org/W3034168389","https://openalex.org/W3034858522","https://openalex.org/W3036967930","https://openalex.org/W3037185429","https://openalex.org/W3108961313","https://openalex.org/W3120046290","https://openalex.org/W3123544697","https://openalex.org/W3128348678","https://openalex.org/W3128563282","https://openalex.org/W4233698560","https://openalex.org/W4241971694","https://openalex.org/W4281286049","https://openalex.org/W4297459672"],"related_works":["https://openalex.org/W1999698559","https://openalex.org/W2016954045","https://openalex.org/W2258994651","https://openalex.org/W2558897355","https://openalex.org/W3036266429","https://openalex.org/W2017923335","https://openalex.org/W2119012848","https://openalex.org/W2622688551","https://openalex.org/W1550175370","https://openalex.org/W1990205660"],"abstract_inverted_index":{"In":[0],"gene":[1,221],"expression":[2,20,43,57,77,89,115,225],"analysis,":[3],"understanding":[4],"a":[5,66,104,118,157,185,214],"biological":[6],"event":[7,38,54,81],"that":[8,72,173,227],"is":[9,65,123],"observed":[10],"at":[11],"some":[12,85],"time":[13,96,120],"instance":[14],"often":[15],"requires":[16],"capturing":[17],"genes":[18,29,71,112,206],"whose":[19],"levels":[21,58],"modulate":[22],"before":[23],"and":[24,39,82,138,167,200,236],"after":[25,49],"the":[26,34,37,46,50,53,80,94,127,135,147,180,211,230,233],"event.":[27,47],"Such":[28],"are":[30],"expected":[31],"to":[32,36,69,110,177,204,208,219],"be":[33],"responders":[35],"will":[40],"exhibit":[41],"similar":[42,75,114],"patterns":[44,78,90,116,183,226],"during":[45],"However,":[48],"effect":[51],"of":[52,87,126,153,160,210],"fades,":[55],"their":[56,61],"may":[59],"loose":[60],"correlation.":[62],"Hence,":[63],"it":[64],"non-trivial":[67],"task":[68],"identify":[70,205],"share":[73],"highly":[74],"local":[76,182],"nearby":[79],"also":[83],"allowing":[84,156],"level":[86],"divergent":[88],"further":[91],"away":[92],"from":[93,195],"event\u2019s":[95],"point.":[97],"Here,":[98],"we":[99,171,189],"propose":[100],"LOCOS":[101,122,145,174,216],"(LOcal":[102],"COSine),":[103],"novel":[105],"time-course":[106,169],"clustering":[107],"algorithm":[108],"tailored":[109],"cluster":[111],"exhibiting":[113],"within":[117,150,184],"specified":[119,186],"interval.":[121,187],"an":[124,151],"extension":[125],"traditional":[128],"Non-negative":[129],"Matrix":[130],"Factorization":[131],"(NMF),":[132],"which":[133],"incorporates":[134],"cosine":[136,148],"similarity":[137,149],"Euclidean":[139,161],"distances":[140],"in":[141],"its":[142],"update":[143],"procedure.":[144],"maximizes":[146],"interval":[152],"interest,":[154],"while":[155],"relaxed":[158],"minimization":[159],"distance":[162],"outside":[163],"it.":[164],"Using":[165],"synthetic":[166],"non-biological":[168],"data,":[170],"showed":[172],"was":[175,217],"able":[176,218],"correctly":[178],"detect":[179],"known":[181],"Furthermore,":[188],"used":[190],"longitudinal":[191],"single-cell":[192],"RNA-seq":[193],"samples":[194],"four":[196],"patients":[197],"showing":[198],"deteriorating":[199],"recovering":[201],"health":[202],"conditions":[203],"related":[207],"each":[209],"phenotype.":[212],"As":[213],"result,":[215],"capture":[220],"clusters":[222],"with":[223,229],"distinct":[224],"aligned":[228],"intervals":[231],"embedding":[232],"clinical":[234],"deterioration":[235],"recovery":[237],"events.":[238]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
