{"id":"https://openalex.org/W4406457947","doi":"https://doi.org/10.1109/bigdata62323.2024.10825295","title":"Interactive Visualization of BioMedical Data","display_name":"Interactive Visualization of BioMedical Data","publication_year":2024,"publication_date":"2024-12-15","ids":{"openalex":"https://openalex.org/W4406457947","doi":"https://doi.org/10.1109/bigdata62323.2024.10825295"},"language":"en","primary_location":{"id":"doi:10.1109/bigdata62323.2024.10825295","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata62323.2024.10825295","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Big Data (BigData)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5099640835","display_name":"Mohammad Shafiqul Islam","orcid":"https://orcid.org/0009-0002-7998-2002"},"institutions":[{"id":"https://openalex.org/I8606887","display_name":"Grand Valley State University","ror":"https://ror.org/001m1hv61","country_code":"US","type":"education","lineage":["https://openalex.org/I8606887"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mohammad Shafiqul Islam","raw_affiliation_strings":["Grand Valley State University,College of Computing,Michigan,USA"],"affiliations":[{"raw_affiliation_string":"Grand Valley State University,College of Computing,Michigan,USA","institution_ids":["https://openalex.org/I8606887"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074024654","display_name":"Rahat Ibn Rafiq","orcid":"https://orcid.org/0000-0003-1829-1750"},"institutions":[{"id":"https://openalex.org/I8606887","display_name":"Grand Valley State University","ror":"https://ror.org/001m1hv61","country_code":"US","type":"education","lineage":["https://openalex.org/I8606887"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rahat Ibn Rafiq","raw_affiliation_strings":["Grand Valley State University,College of Computing,Michigan,USA"],"affiliations":[{"raw_affiliation_string":"Grand Valley State University,College of Computing,Michigan,USA","institution_ids":["https://openalex.org/I8606887"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023628460","display_name":"Guenter Tusch","orcid":"https://orcid.org/0000-0002-1345-3565"},"institutions":[{"id":"https://openalex.org/I8606887","display_name":"Grand Valley State University","ror":"https://ror.org/001m1hv61","country_code":"US","type":"education","lineage":["https://openalex.org/I8606887"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guenter Tusch","raw_affiliation_strings":["Grand Valley State University,College of Computing,Michigan,USA"],"affiliations":[{"raw_affiliation_string":"Grand Valley State University,College of Computing,Michigan,USA","institution_ids":["https://openalex.org/I8606887"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5099640835"],"corresponding_institution_ids":["https://openalex.org/I8606887"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22174352,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"4981","last_page":"4988"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9660000205039978,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6997684240341187},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.694475531578064},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.6401516199111938},{"id":"https://openalex.org/keywords/information-visualization","display_name":"Information visualization","score":0.41682565212249756},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4137824773788452},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.4093213379383087},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3859155774116516},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3515082001686096},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22500675916671753}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6997684240341187},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.694475531578064},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.6401516199111938},{"id":"https://openalex.org/C185578843","wikidata":"https://www.wikidata.org/wiki/Q10609775","display_name":"Information visualization","level":3,"score":0.41682565212249756},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4137824773788452},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.4093213379383087},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3859155774116516},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3515082001686096},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22500675916671753}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bigdata62323.2024.10825295","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata62323.2024.10825295","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Big Data (BigData)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1034019924","https://openalex.org/W1578104218","https://openalex.org/W1602242617","https://openalex.org/W1964670939","https://openalex.org/W2037625543","https://openalex.org/W2071038402","https://openalex.org/W2106391842","https://openalex.org/W2122402213","https://openalex.org/W2123179625","https://openalex.org/W2125910575","https://openalex.org/W2159675211","https://openalex.org/W2767490506","https://openalex.org/W2783495875","https://openalex.org/W2800338966","https://openalex.org/W2805947038","https://openalex.org/W2917858269","https://openalex.org/W2946690328","https://openalex.org/W2972806962","https://openalex.org/W2999018780","https://openalex.org/W3115232674","https://openalex.org/W3207974842","https://openalex.org/W4321483180","https://openalex.org/W4385270266","https://openalex.org/W4400129959","https://openalex.org/W6608313838","https://openalex.org/W6632766574","https://openalex.org/W6747770579","https://openalex.org/W6820529903"],"related_works":["https://openalex.org/W2105200106","https://openalex.org/W1574055964","https://openalex.org/W2295030662","https://openalex.org/W4225274103","https://openalex.org/W2923661510","https://openalex.org/W1938514595","https://openalex.org/W2006240110","https://openalex.org/W2751110224","https://openalex.org/W2579659702","https://openalex.org/W2520625499"],"abstract_inverted_index":{"Public":[0],"databases":[1],"such":[2,66],"as":[3,67],"the":[4,94,152,163],"NCBI":[5],"Gene":[6],"Expression":[7],"Omnibus":[8],"(GEO)":[9],"house":[10],"millions":[11],"of":[12],"experimental":[13],"gene":[14],"expression":[15],"datasets":[16,35],"invaluable":[17],"for":[18,122,144,173],"transcriptome":[19],"meta-analysis,":[20],"enabling":[21],"researchers":[22,132],"to":[23,61,92,133],"identify":[24],"genes,":[25,68],"pathways,":[26,69],"and":[27,72,74,103,140,147,162,177],"biomarkers":[28],"with":[29],"enhanced":[30],"accuracy.":[31],"However,":[32],"while":[33],"these":[34],"offer":[36],"great":[37],"potential,":[38],"finding":[39],"relevant":[40],"biological":[41,126],"pathways":[42,143],"in":[43,159],"disease-related":[44],"contexts":[45],"remains":[46],"challenging.":[47],"To":[48],"address":[49],"this,":[50],"we":[51],"introduce":[52],"a":[53,115,119],"web-based":[54],"visualization":[55],"tool":[56,89,109],"that":[57],"utilizes":[58],"PubMed":[59],"abstracts":[60],"extract":[62],"key":[63],"biomedical":[64,138,160],"entities,":[65],"diseases,":[70],"species,":[71],"chemicals,":[73],"represent":[75],"their":[76],"relationships":[77,135],"through":[78],"an":[79],"interactive":[80,129],"graph.":[81],"By":[82],"leveraging":[83],"PubMed\u2019s":[84],"annotated":[85],"MeSH":[86],"terms,":[87],"our":[88],"allows":[90],"users":[91],"explore":[93],"literature":[95],"more":[96],"intuitively,":[97],"bypassing":[98],"traditional":[99],"dataset":[100],"search":[101],"limitations":[102],"focusing":[104],"on":[105],"published":[106],"results.":[107],"The":[108],"transforms":[110],"complex":[111],"query":[112],"outputs":[113],"into":[114],"graph-based":[116],"network,":[117],"providing":[118],"visual":[120],"interface":[121],"navigating":[123],"connections":[124],"between":[125],"entities.":[127],"This":[128],"approach":[130],"helps":[131],"analyze":[134],"within":[136],"large-scale":[137],"data":[139,175],"uncover":[141],"potential":[142],"drug":[145],"repurposing":[146],"disease":[148],"understanding.":[149],"We":[150],"discuss":[151],"tool\u2019s":[153],"design":[154],"using":[155],"D3.js,":[156],"its":[157],"application":[158],"research,":[161],"challenges":[164],"faced":[165],"when":[166],"visualizing":[167],"large":[168],"datasets,":[169],"offering":[170],"new":[171],"insights":[172],"improved":[174],"interpretation":[176],"exploration.":[178]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
