{"id":"https://openalex.org/W4406458879","doi":"https://doi.org/10.1109/bigdata62323.2024.10825145","title":"AnVILMEDFORD: Documenting Cloud-Based Analysis Projects Using the MEDFORD Metadata Language","display_name":"AnVILMEDFORD: Documenting Cloud-Based Analysis Projects Using the MEDFORD Metadata Language","publication_year":2024,"publication_date":"2024-12-15","ids":{"openalex":"https://openalex.org/W4406458879","doi":"https://doi.org/10.1109/bigdata62323.2024.10825145"},"language":"en","primary_location":{"id":"doi:10.1109/bigdata62323.2024.10825145","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata62323.2024.10825145","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Big Data (BigData)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111113924","display_name":"Benjamin J. Stubbs","orcid":null},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Benjamin Stubbs","raw_affiliation_strings":["Tufts University,Department of Computer Science,Medford,MA,USA"],"affiliations":[{"raw_affiliation_string":"Tufts University,Department of Computer Science,Medford,MA,USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023462847","display_name":"Polina Shpilker","orcid":"https://orcid.org/0000-0002-6761-7326"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Polina Shpilker","raw_affiliation_strings":["Tufts University,Department of Computer Science,Medford,MA,USA"],"affiliations":[{"raw_affiliation_string":"Tufts University,Department of Computer Science,Medford,MA,USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011736486","display_name":"Michael W. Sayers","orcid":null},"institutions":[{"id":"https://openalex.org/I17626003","display_name":"University of Rhode Island","ror":"https://ror.org/013ckk937","country_code":"US","type":"education","lineage":["https://openalex.org/I17626003"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Sayers","raw_affiliation_strings":["University of Rhode Island,Dept. of Computer Science and Statistics,Kingston,RI,USA"],"affiliations":[{"raw_affiliation_string":"University of Rhode Island,Dept. of Computer Science and Statistics,Kingston,RI,USA","institution_ids":["https://openalex.org/I17626003"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066326936","display_name":"Shaun Wallace","orcid":"https://orcid.org/0000-0001-5297-1659"},"institutions":[{"id":"https://openalex.org/I144852770","display_name":"The King's College","ror":"https://ror.org/051j50p12","country_code":"US","type":"education","lineage":["https://openalex.org/I144852770"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shaun Wallace","raw_affiliation_strings":["Dept. of Computer Science and Statistics,Dept. of Computer Science,Kingston,RI,USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science and Statistics,Dept. of Computer Science,Kingston,RI,USA","institution_ids":["https://openalex.org/I144852770"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071391690","display_name":"Noah M. Daniels","orcid":"https://orcid.org/0000-0002-9538-825X"},"institutions":[{"id":"https://openalex.org/I17626003","display_name":"University of Rhode Island","ror":"https://ror.org/013ckk937","country_code":"US","type":"education","lineage":["https://openalex.org/I17626003"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Noah M. Daniels","raw_affiliation_strings":["University of Rhode Island,Dept. of Computer Science and Statistics,Kingston,RI,USA"],"affiliations":[{"raw_affiliation_string":"University of Rhode Island,Dept. of Computer Science and Statistics,Kingston,RI,USA","institution_ids":["https://openalex.org/I17626003"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081556200","display_name":"Alva Couch","orcid":"https://orcid.org/0000-0002-4169-1077"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alva Couch","raw_affiliation_strings":["Tufts University,Department of Computer Science,Medford,MA,USA"],"affiliations":[{"raw_affiliation_string":"Tufts University,Department of Computer Science,Medford,MA,USA","institution_ids":["https://openalex.org/I121934306"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5111113924"],"corresponding_institution_ids":["https://openalex.org/I121934306"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28124698,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"3158","last_page":"3162"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11891","display_name":"Big Data and Business Intelligence","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1404","display_name":"Management Information Systems"},"field":{"id":"https://openalex.org/fields/14","display_name":"Business, Management and Accounting"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8827859163284302},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7760027647018433},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.675225019454956},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5487769246101379},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.43632882833480835},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.36350369453430176},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3265639543533325},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08342930674552917}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8827859163284302},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7760027647018433},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.675225019454956},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5487769246101379},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.43632882833480835},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.36350369453430176},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3265639543533325},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08342930674552917}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bigdata62323.2024.10825145","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata62323.2024.10825145","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Big Data (BigData)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.550000011920929}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1999308248","https://openalex.org/W2089433175","https://openalex.org/W2170493558","https://openalex.org/W2302501749","https://openalex.org/W2480733761","https://openalex.org/W2765635284","https://openalex.org/W2988998130","https://openalex.org/W3124169140","https://openalex.org/W3200572611","https://openalex.org/W4206499307","https://openalex.org/W4286513803","https://openalex.org/W4292109562","https://openalex.org/W6676206672","https://openalex.org/W6680316511"],"related_works":["https://openalex.org/W2058118494","https://openalex.org/W2392768766","https://openalex.org/W2382021449","https://openalex.org/W2095118173","https://openalex.org/W2106424170","https://openalex.org/W1985426483","https://openalex.org/W2501188010","https://openalex.org/W4299935056","https://openalex.org/W2010935248","https://openalex.org/W2768810474"],"abstract_inverted_index":{"This":[0],"paper":[1],"introduces":[2],"AnVILMEDFORD,":[3],"an":[4,58],"R":[5],"package":[6,75],"that":[7,39],"aims":[8],"to":[9,44,56,80,93],"enable":[10],"MEDFORD":[11,46,64],"metadata":[12],"annotation":[13],"from":[14,48],"within":[15,31],"the":[16,27,32,72,77,90,95,98],"cloud":[17],"based":[18],"AnVIL":[19,33,59,74,78,84,91],"platform":[20],"for":[21],"computational":[22],"analysis.":[23],"AnVILMEDFORD":[24,67],"helps":[25],"solve":[26],"problem":[28],"of":[29],"documentation":[30,47],"environment":[34],"by":[35,70],"providing":[36],"bidirectional":[37],"tools":[38],"both":[40],"allow":[41,53],"a":[42,49,54,63],"user":[43,55],"generate":[45],"workspace,":[50],"and":[51,76,82],"also":[52],"update":[57,94],"workspace":[60,96],"starting":[61],"with":[62,89],"meta-data":[65],"file.":[66],"accomplishes":[68],"this":[69],"leveraging":[71],"Bioconductor":[73],"API":[79,92],"download":[81],"process":[83],"metadata,":[85],"Tree-sitter-medford":[86],"module":[87],"along":[88],"in":[97],"cloud.":[99],"An":[100],"implementation":[101],"is":[102],"available":[103],"at":[104],"https://github.com/bjstubbs/AnVILMEDFORD":[105]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
