{"id":"https://openalex.org/W3136945130","doi":"https://doi.org/10.1109/bigdata50022.2020.9378443","title":"Challenges and Barriers in Applying Natural Language Processing to Medical Examiner Notes from Fatal Opioid Poisoning Cases","display_name":"Challenges and Barriers in Applying Natural Language Processing to Medical Examiner Notes from Fatal Opioid Poisoning Cases","publication_year":2020,"publication_date":"2020-12-10","ids":{"openalex":"https://openalex.org/W3136945130","doi":"https://doi.org/10.1109/bigdata50022.2020.9378443","mag":"3136945130","pmid":"https://pubmed.ncbi.nlm.nih.gov/35282306"},"language":"en","primary_location":{"id":"doi:10.1109/bigdata50022.2020.9378443","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata50022.2020.9378443","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8910776","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013578015","display_name":"Daniel R. Harris","orcid":"https://orcid.org/0000-0001-9139-3433"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel R. Harris","raw_affiliation_strings":["Center for Clinical and Translational Sciences, University of Kentucky, Lexington, Kentucky 40506","Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky 40506","Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky","Center for Clinical and Translational Sciences, University of Kentucky, Lexington, Kentucky"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Clinical and Translational Sciences, University of Kentucky, Lexington, Kentucky 40506","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky 40506","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Center for Clinical and Translational Sciences, University of Kentucky, Lexington, Kentucky","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051964519","display_name":"Christian Eisinger","orcid":null},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christian Eisinger","raw_affiliation_strings":["Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky 40506","Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky 40506","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050058322","display_name":"Yanning Wang","orcid":"https://orcid.org/0000-0002-4263-3944"},"institutions":[{"id":"https://openalex.org/I2800717037","display_name":"University of Florida Health","ror":"https://ror.org/04tk2gy88","country_code":"US","type":"education","lineage":["https://openalex.org/I2800717037"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanning Wang","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, University of Florida, Gainesville, Florida 32611","Department of Health Outcomes and Biomedical Informatics, University of Florida, Gainesville, Florida"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, University of Florida, Gainesville, Florida 32611","institution_ids":["https://openalex.org/I2800717037"]},{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, University of Florida, Gainesville, Florida","institution_ids":["https://openalex.org/I2800717037"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087903373","display_name":"Chris Delcher","orcid":"https://orcid.org/0000-0001-7214-0326"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Delcher","raw_affiliation_strings":["Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky 40506","Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky 40506","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Institute for Pharmaceutical Outcomes and Policy, University of Kentucky, Lexington, Kentucky","institution_ids":["https://openalex.org/I143302722"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2020","issue":null,"first_page":"3727","last_page":"3736"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9797000288963318,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9743000268936157,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/medical-examiner","display_name":"Medical examiner","score":0.739086389541626},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6647664904594421},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5505264401435852},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5172874927520752},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.4940831959247589},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.4927370846271515},{"id":"https://openalex.org/keywords/intersection","display_name":"Intersection (aeronautics)","score":0.43084412813186646},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.42972639203071594},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4188721776008606},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4063679575920105},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3522096276283264},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.2309991717338562},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20730388164520264},{"id":"https://openalex.org/keywords/poison-control","display_name":"Poison control","score":0.19492468237876892},{"id":"https://openalex.org/keywords/human-factors-and-ergonomics","display_name":"Human factors and ergonomics","score":0.13678306341171265},{"id":"https://openalex.org/keywords/medical-emergency","display_name":"Medical emergency","score":0.1184823215007782},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11713501811027527}],"concepts":[{"id":"https://openalex.org/C2778200388","wikidata":"https://www.wikidata.org/wiki/Q17143199","display_name":"Medical examiner","level":4,"score":0.739086389541626},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6647664904594421},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5505264401435852},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5172874927520752},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.4940831959247589},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.4927370846271515},{"id":"https://openalex.org/C64543145","wikidata":"https://www.wikidata.org/wiki/Q162942","display_name":"Intersection (aeronautics)","level":2,"score":0.43084412813186646},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.42972639203071594},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4188721776008606},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4063679575920105},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3522096276283264},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.2309991717338562},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20730388164520264},{"id":"https://openalex.org/C3017944768","wikidata":"https://www.wikidata.org/wiki/Q1450463","display_name":"Poison control","level":2,"score":0.19492468237876892},{"id":"https://openalex.org/C166735990","wikidata":"https://www.wikidata.org/wiki/Q1750812","display_name":"Human factors and ergonomics","level":3,"score":0.13678306341171265},{"id":"https://openalex.org/C545542383","wikidata":"https://www.wikidata.org/wiki/Q2751242","display_name":"Medical emergency","level":1,"score":0.1184823215007782},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11713501811027527},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bigdata50022.2020.9378443","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata50022.2020.9378443","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"},{"id":"pmid:35282306","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35282306","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8910776","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8910776","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc IEEE Int Conf Big Data","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8910776","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8910776","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc IEEE Int Conf Big Data","raw_type":"Text"},"sustainable_development_goals":[{"score":0.7900000214576721,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G4786487024","display_name":null,"funder_award_id":"UL1 TR001998","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W186091728","https://openalex.org/W1483357098","https://openalex.org/W1541250240","https://openalex.org/W1550258693","https://openalex.org/W1838551284","https://openalex.org/W1967274588","https://openalex.org/W2015853444","https://openalex.org/W2016268421","https://openalex.org/W2096951189","https://openalex.org/W2114437753","https://openalex.org/W2122402213","https://openalex.org/W2133962053","https://openalex.org/W2139865360","https://openalex.org/W2159583324","https://openalex.org/W2169818249","https://openalex.org/W2494765408","https://openalex.org/W2786756298","https://openalex.org/W2793682084","https://openalex.org/W2891469329","https://openalex.org/W2917157846","https://openalex.org/W2943011707","https://openalex.org/W2943279365","https://openalex.org/W2973977093","https://openalex.org/W2980822619","https://openalex.org/W3005075248","https://openalex.org/W3007800087","https://openalex.org/W3030231836","https://openalex.org/W3031370291","https://openalex.org/W6607411190","https://openalex.org/W6628888145","https://openalex.org/W6632766574","https://openalex.org/W6748250896","https://openalex.org/W6778571787","https://openalex.org/W6779277530"],"related_works":["https://openalex.org/W2909600335","https://openalex.org/W2258008737","https://openalex.org/W1967136599","https://openalex.org/W2321746324","https://openalex.org/W2282279810","https://openalex.org/W97592515","https://openalex.org/W2123826233","https://openalex.org/W2916147465","https://openalex.org/W1757434866","https://openalex.org/W2251431888"],"abstract_inverted_index":{"We":[0],"detail":[1,95],"the":[2,86,145],"challenges":[3],"and":[4,43,90,101,123,154],"barriers":[5],"in":[6,28,118,143],"applying":[7],"natural":[8,33],"language":[9,34],"processing":[10,35,98],"techniques":[11],"to":[12,22,52,129,135,157],"a":[13,41,119,139],"collection":[14],"of":[15,37,66,74,81,88,147,166],"medical":[16,38,120],"examiner":[17],"case":[18,106,136],"investigation":[19,107],"notes":[20,110,137],"related":[21,128,152],"fatal":[23,130],"opioid":[24,131],"poisonings.":[25,132],"Major":[26],"advances":[27,146],"biomedical":[29,57,67,148],"informatics":[30],"have":[31],"made":[32],"(NLP)":[36],"texts":[39,71],"both":[40],"realistic":[42],"useful":[44],"task.":[45],"Biomedical":[46],"NLP":[47,68,134,149],"tools":[48,69],"are":[49],"typically":[50],"designed":[51],"process":[53],"documents":[54,83],"originating":[55],"from":[56],"libraries":[58],"or":[59],"electronic":[60],"health":[61],"records":[62],"(EHRs).":[63],"The":[64],"usefulness":[65],"on":[70],"authored":[72,112],"outside":[73,165],"EHRs":[75],"is":[76,138],"unclear,":[77],"despite":[78],"an":[79],"abundance":[80],"medicolegal":[82],"existing":[84],"at":[85],"intersection":[87],"medicine":[89],"law.":[91],"In":[92],"particular,":[93],"we":[94],"our":[96],"experiences":[97],"unstructured":[99,162],"text":[100],"extracting":[102],"semantic":[103],"concepts":[104],"using":[105],"notes;":[108],"these":[109],"were":[111],"by":[113],"trained":[114],"investigative":[115],"professionals":[116],"working":[117,160],"examiner's":[121],"office":[122],"describe":[124],"cases":[125],"containing":[126],"deaths":[127],"Applying":[133],"particularly":[140],"important":[141],"step":[142],"generalizing":[144],"for":[150],"other":[151],"domains":[153],"giving":[155],"guidance":[156],"data":[158,163],"scientists":[159],"with":[161],"generated":[164],"EHRs.":[167]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
