{"id":"https://openalex.org/W3136224808","doi":"https://doi.org/10.1109/bigdata50022.2020.9377981","title":"Mining Concepts for a COVID Interface Terminology for Annotation of EHRs","display_name":"Mining Concepts for a COVID Interface Terminology for Annotation of EHRs","publication_year":2020,"publication_date":"2020-12-10","ids":{"openalex":"https://openalex.org/W3136224808","doi":"https://doi.org/10.1109/bigdata50022.2020.9377981","mag":"3136224808"},"language":"en","primary_location":{"id":"doi:10.1109/bigdata50022.2020.9377981","is_oa":true,"landing_page_url":"https://doi.org/10.1109/bigdata50022.2020.9377981","pdf_url":"https://ieeexplore.ieee.org/ielx7/9377717/9377728/09377981.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/9377717/9377728/09377981.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080240865","display_name":"Vipina K. Keloth","orcid":"https://orcid.org/0000-0001-6919-1122"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vipina K. Keloth","raw_affiliation_strings":["Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033069494","display_name":"Shuxin Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuxin Zhou","raw_affiliation_strings":["Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037132558","display_name":"Luke Lindemann","orcid":"https://orcid.org/0000-0003-2675-5244"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luke Lindemann","raw_affiliation_strings":["Yale Center for Medical Informatics, Yale University, New Haven, CT, USA"],"affiliations":[{"raw_affiliation_string":"Yale Center for Medical Informatics, Yale University, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049544815","display_name":"Gai Elhanan","orcid":"https://orcid.org/0000-0003-1518-5522"},"institutions":[{"id":"https://openalex.org/I60138030","display_name":"Desert Research Institute","ror":"https://ror.org/02vg22c33","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I60138030"]},{"id":"https://openalex.org/I2802417501","display_name":"Renown Health","ror":"https://ror.org/00w205b62","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802417501"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gai Elhanan","raw_affiliation_strings":["Renown Institute for Health Innovation, Desert Research Institute, Reno, NV, USA"],"affiliations":[{"raw_affiliation_string":"Renown Institute for Health Innovation, Desert Research Institute, Reno, NV, USA","institution_ids":["https://openalex.org/I2802417501","https://openalex.org/I60138030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042867497","display_name":"Andrew J. Einstein","orcid":"https://orcid.org/0000-0003-2583-9278"},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew J. Einstein","raw_affiliation_strings":["Dept. of Medicine, Cardiology Division, and Dept. of Radiology, Columbia University Irving Medical Center, New York, NY, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Medicine, Cardiology Division, and Dept. of Radiology, Columbia University Irving Medical Center, New York, NY, USA","institution_ids":["https://openalex.org/I2799503643"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070654032","display_name":"James Geller","orcid":"https://orcid.org/0000-0002-9120-525X"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Geller","raw_affiliation_strings":["Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077648725","display_name":"Yehoshua Perl","orcid":"https://orcid.org/0000-0003-1940-9386"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yehoshua Perl","raw_affiliation_strings":["Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA","institution_ids":["https://openalex.org/I118118575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5080240865"],"corresponding_institution_ids":["https://openalex.org/I118118575"],"apc_list":null,"apc_paid":null,"fwci":0.585,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.66353284,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"3753","last_page":"3760"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.9149202108383179},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7568661570549011},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6463215351104736},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.593011200428009},{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.5335137844085693},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.5014710426330566},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46879062056541443},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4491085410118103},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.42248764634132385},{"id":"https://openalex.org/keywords/concatenation","display_name":"Concatenation (mathematics)","score":0.41349565982818604},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40312162041664124},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38202840089797974},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3459692597389221},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16201910376548767},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.10264438390731812},{"id":"https://openalex.org/keywords/nursing","display_name":"Nursing","score":0.09053871035575867},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.08799198269844055}],"concepts":[{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.9149202108383179},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7568661570549011},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6463215351104736},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.593011200428009},{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.5335137844085693},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.5014710426330566},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46879062056541443},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4491085410118103},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.42248764634132385},{"id":"https://openalex.org/C87619178","wikidata":"https://www.wikidata.org/wiki/Q126002","display_name":"Concatenation (mathematics)","level":2,"score":0.41349565982818604},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40312162041664124},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38202840089797974},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3459692597389221},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16201910376548767},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.10264438390731812},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.09053871035575867},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.08799198269844055},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bigdata50022.2020.9377981","is_oa":true,"landing_page_url":"https://doi.org/10.1109/bigdata50022.2020.9377981","pdf_url":"https://ieeexplore.ieee.org/ielx7/9377717/9377728/09377981.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1109/bigdata50022.2020.9377981","is_oa":true,"landing_page_url":"https://doi.org/10.1109/bigdata50022.2020.9377981","pdf_url":"https://ieeexplore.ieee.org/ielx7/9377717/9377728/09377981.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6100000143051147,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1279611746","display_name":null,"funder_award_id":"UL1TR0030","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2789588635","display_name":null,"funder_award_id":"NCATS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3797236039","display_name":null,"funder_award_id":"UL1TR003017","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G5624287662","display_name":null,"funder_award_id":"UL1TR00301","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G6825640061","display_name":null,"funder_award_id":"UL1TR003017","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3136224808.pdf","grobid_xml":"https://content.openalex.org/works/W3136224808.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W7126071","https://openalex.org/W102787101","https://openalex.org/W1511588844","https://openalex.org/W1608277397","https://openalex.org/W1984314602","https://openalex.org/W2033377040","https://openalex.org/W2041069220","https://openalex.org/W2067819940","https://openalex.org/W2102626131","https://openalex.org/W2113142309","https://openalex.org/W2122402213","https://openalex.org/W2136410628","https://openalex.org/W2142678031","https://openalex.org/W2146089916","https://openalex.org/W2158449466","https://openalex.org/W2159583324","https://openalex.org/W2165748167","https://openalex.org/W2168091868","https://openalex.org/W2404369708","https://openalex.org/W2579555219","https://openalex.org/W2769851464","https://openalex.org/W2783547086","https://openalex.org/W2946690328","https://openalex.org/W2948909602","https://openalex.org/W3013323180","https://openalex.org/W3018965582","https://openalex.org/W3035434194","https://openalex.org/W3081980945","https://openalex.org/W3101907797","https://openalex.org/W4205569004","https://openalex.org/W4381594492","https://openalex.org/W6604181502","https://openalex.org/W6630726545","https://openalex.org/W6713634263"],"related_works":["https://openalex.org/W2039735462","https://openalex.org/W2951665393","https://openalex.org/W4297803142","https://openalex.org/W2770499767","https://openalex.org/W2295806952","https://openalex.org/W2293521960","https://openalex.org/W172101468","https://openalex.org/W2405923535","https://openalex.org/W1511848092","https://openalex.org/W1708042184"],"abstract_inverted_index":{"The":[0,58,106],"COVID-19":[1,50,104,202],"pandemic":[2],"has":[3,51,84],"overwhelmed":[4],"the":[5,25,40,74,98,125,145,151,164,171,175,197],"healthcare":[6,56],"services":[7],"of":[8,14,21,30,49,60,67,76,100,103,109,124,153,174,201],"many":[9],"countries":[10],"with":[11,18],"increased":[12],"number":[13],"patients":[15,203],"and":[16,27,47,155],"also":[17,181],"a":[19,77,93],"deluge":[20],"medical":[22],"data.":[23],"Furthermore,":[24],"emergence":[26],"global":[28],"spread":[29],"new":[31],"infectious":[32],"diseases":[33],"are":[34,140],"highly":[35],"likely":[36],"to":[37,80,91,158,169],"continue":[38],"in":[39,144,183,207,211],"future.":[41],"Incomplete":[42],"data":[43,70,83,186],"about":[44,71],"presentations,":[45],"signs,":[46],"symptoms":[48],"had":[52],"adverse":[53],"effects":[54],"on":[55],"delivery.":[57],"EHRs":[59],"US":[61],"hospitals":[62],"have":[63],"ingested":[64],"huge":[65],"volumes":[66],"relevant,":[68],"up-to-date":[69],"patients,":[72],"but":[73],"lack":[75],"proper":[78],"system":[79],"annotate":[81],"this":[82,110,179,212],"greatly":[85],"reduced":[86],"its":[87],"usefulness.":[88],"We":[89,149],"propose":[90],"design":[92],"COVID":[94,117,176],"interface":[95,111,126,177],"terminology":[96,112,127],"for":[97,187],"annotation":[99],"EHR":[101],"notes":[102,200],"patients.":[105],"initial":[107],"version":[108],"was":[113],"created":[114],"by":[115,130],"integrating":[116],"concepts":[118,134,139],"from":[119,135,163],"existing":[120,146],"ontologies.":[121],"Further":[122],"enrichment":[123],"is":[128],"performed":[129],"mining":[131,191],"high":[132,160],"granularity":[133,161],"EHRs,":[136],"because":[137],"such":[138],"usually":[141],"not":[142],"present":[143],"reference":[147],"terminologies.":[148],"use":[150],"techniques":[152],"concatenation":[154],"anchoring":[156],"iteratively":[157],"extract":[159],"phrases":[162],"clinical":[165,199],"text.":[166],"In":[167],"addition":[168],"increasing":[170],"conceptual":[172],"base":[173],"terminology,":[178],"will":[180,205],"help":[182,206],"generating":[184],"training":[185],"large":[188],"scale":[189],"concept":[190],"using":[192],"machine":[193],"learning":[194],"techniques.":[195],"Having":[196],"annotated":[198],"available":[204],"speeding":[208],"up":[209],"research":[210],"field.":[213]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
