{"id":"https://openalex.org/W3006705563","doi":"https://doi.org/10.1109/bigdata47090.2019.9006241","title":"Enhancing Clinical Information Retrieval through Context-Aware Queries and Indices","display_name":"Enhancing Clinical Information Retrieval through Context-Aware Queries and Indices","publication_year":2019,"publication_date":"2019-12-01","ids":{"openalex":"https://openalex.org/W3006705563","doi":"https://doi.org/10.1109/bigdata47090.2019.9006241","mag":"3006705563","pmid":"https://pubmed.ncbi.nlm.nih.gov/38213777"},"language":"en","primary_location":{"id":"doi:10.1109/bigdata47090.2019.9006241","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata47090.2019.9006241","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10782810/pdf/nihms-1955973.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003128469","display_name":"Andrew Wen","orcid":"https://orcid.org/0000-0001-9090-8028"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrew Wen","raw_affiliation_strings":["Division of Digital Health Sciences Mayo Clinic, Rochester MN, USA","Division of Digital Health Sciences Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Division of Digital Health Sciences Mayo Clinic, Rochester MN, USA","institution_ids":[]},{"raw_affiliation_string":"Division of Digital Health Sciences Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080116611","display_name":"Yanshan Wang","orcid":"https://orcid.org/0000-0003-4433-7839"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanshan Wang","raw_affiliation_strings":["Division of Digital Health Sciences Mayo Clinic, Rochester MN, USA","Division of Digital Health Sciences Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Division of Digital Health Sciences Mayo Clinic, Rochester MN, USA","institution_ids":[]},{"raw_affiliation_string":"Division of Digital Health Sciences Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067681266","display_name":"Vinod C. Kaggal","orcid":"https://orcid.org/0000-0003-0944-2211"},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vinod C. Kaggal","raw_affiliation_strings":["Department of Information Technology Mayo Clinic, Rochester MN, USA","Department of Information Technology, Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology Mayo Clinic, Rochester MN, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Information Technology, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210125099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100321835","display_name":"Sijia Liu","orcid":"https://orcid.org/0000-0001-9763-1164"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sijia Liu","raw_affiliation_strings":["Division of Digital Health Sciences Mayo Clinic, Rochester MN, USA","Division of Digital Health Sciences Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Division of Digital Health Sciences Mayo Clinic, Rochester MN, USA","institution_ids":[]},{"raw_affiliation_string":"Division of Digital Health Sciences Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101585391","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2570-3741"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongfang Liu","raw_affiliation_strings":["Division of Digital Health Sciences Mayo Clinic, Rochester MN, USA","Division of Digital Health Sciences Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Division of Digital Health Sciences Mayo Clinic, Rochester MN, USA","institution_ids":[]},{"raw_affiliation_string":"Division of Digital Health Sciences Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043910718","display_name":"Jungwei Fan","orcid":"https://orcid.org/0000-0001-6349-3752"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jungwei Fan","raw_affiliation_strings":["Division of Digital Health Sciences Mayo Clinic, Rochester MN, USA","Division of Digital Health Sciences Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Division of Digital Health Sciences Mayo Clinic, Rochester MN, USA","institution_ids":[]},{"raw_affiliation_string":"Division of Digital Health Sciences Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5003128469"],"corresponding_institution_ids":["https://openalex.org/I4210146710"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.23864633,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"16","issue":null,"first_page":"2800","last_page":"2807"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7882519960403442},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.6890947818756104},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6828368902206421},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6706274151802063},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6376838684082031},{"id":"https://openalex.org/keywords/negation","display_name":"Negation","score":0.5023608207702637},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4882557690143585},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.44083571434020996},{"id":"https://openalex.org/keywords/ehealth","display_name":"eHealth","score":0.4346187710762024},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41934534907341003},{"id":"https://openalex.org/keywords/latent-dirichlet-allocation","display_name":"Latent Dirichlet allocation","score":0.4187712073326111},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36963367462158203},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.29754191637039185},{"id":"https://openalex.org/keywords/topic-model","display_name":"Topic model","score":0.19929462671279907}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7882519960403442},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.6890947818756104},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6828368902206421},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6706274151802063},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6376838684082031},{"id":"https://openalex.org/C2185349","wikidata":"https://www.wikidata.org/wiki/Q190558","display_name":"Negation","level":2,"score":0.5023608207702637},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4882557690143585},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.44083571434020996},{"id":"https://openalex.org/C202645933","wikidata":"https://www.wikidata.org/wiki/Q4930","display_name":"eHealth","level":3,"score":0.4346187710762024},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41934534907341003},{"id":"https://openalex.org/C500882744","wikidata":"https://www.wikidata.org/wiki/Q269236","display_name":"Latent Dirichlet allocation","level":3,"score":0.4187712073326111},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36963367462158203},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.29754191637039185},{"id":"https://openalex.org/C171686336","wikidata":"https://www.wikidata.org/wiki/Q3532085","display_name":"Topic model","level":2,"score":0.19929462671279907},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bigdata47090.2019.9006241","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata47090.2019.9006241","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"},{"id":"pmid:38213777","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38213777","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10782810","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10782810","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10782810/pdf/nihms-1955973.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc IEEE Int Conf Big Data","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10782810","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10782810","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10782810/pdf/nihms-1955973.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc IEEE Int Conf Big Data","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.7699999809265137,"id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G6071359385","display_name":null,"funder_award_id":"U01TR002062","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6568267561","display_name":null,"funder_award_id":"R01LM011934","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306143","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3006705563.pdf"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W321922667","https://openalex.org/W1532325895","https://openalex.org/W1964625659","https://openalex.org/W1967274588","https://openalex.org/W2037140704","https://openalex.org/W2109244020","https://openalex.org/W2138662031","https://openalex.org/W2139865360","https://openalex.org/W2155482025","https://openalex.org/W2734531095","https://openalex.org/W2948995460","https://openalex.org/W4252076394","https://openalex.org/W6611144009","https://openalex.org/W6631834165"],"related_works":["https://openalex.org/W3126382579","https://openalex.org/W3107650560","https://openalex.org/W4308190148","https://openalex.org/W2059922809","https://openalex.org/W2196310376","https://openalex.org/W4281488710","https://openalex.org/W4310458807","https://openalex.org/W754949616","https://openalex.org/W2887033287","https://openalex.org/W4315588616"],"abstract_inverted_index":{"The":[0,191,224],"big":[1],"data":[2,27,71],"revolution":[3],"has":[4],"created":[5],"a":[6,38,65,138,194],"hefty":[7],"demand":[8],"for":[9,49],"searching":[10],"large-scale":[11],"electronic":[12],"health":[13],"records":[14],"(EHRs)":[15],"to":[16,37,160],"support":[17],"clinical":[18,34,39,89,98,106,120,123,235],"practice,":[19],"research,":[20],"and":[21,30,75,116,142,179,188,216,237,243],"administration.":[22],"Despite":[23],"the":[24,52,57,68,88,117,144,169,172,176,183,209,228,238],"volume":[25],"of":[26,33,54,67,119,150,168,175,182,230],"involved,":[28],"fast":[29],"accurate":[31],"identification":[32],"narratives":[35],"pertinent":[36],"case":[40],"being":[41,85],"seen":[42],"by":[43,140],"any":[44],"given":[45],"provider":[46],"is":[47,62,108,126],"crucial":[48],"decision-making":[50],"at":[51],"point":[53],"care.":[55],"In":[56,133],"general":[58,130],"domain,":[59,90],"this":[60,134],"capability":[61],"accomplished":[63],"through":[64],"combination":[66],"inverted":[69],"index":[70],"structure,":[72],"horizontal":[73],"scaling,":[74],"information":[76,233],"retrieval":[77,198],"(IR)":[78],"scoring":[79],"algorithms.":[80],"These":[81],"technologies":[82],"are":[83],"also":[84],"used":[86],"in":[87,129,158,197,221,241],"but":[91,125],"have":[92],"met":[93],"limited":[94],"success,":[95],"particularly":[96],"as":[97,113,148],"cases":[99],"become":[100],"more":[101],"complex.":[102],"One":[103],"barrier":[104],"affecting":[105],"performance":[107],"that":[109],"contextual":[110,232],"information,":[111],"such":[112],"negation,":[114],"temporality,":[115],"subject":[118],"mentions,":[121],"impact":[122,170,184],"relevance":[124,226],"not":[127],"considered":[128],"IR":[131,151],"methodologies.":[132],"study,":[135],"we":[136],"implemented":[137],"solution":[139,210],"identifying":[141],"incorporating":[143,231],"aforementioned":[145],"semantic":[146],"contexts":[147],"part":[149],"indexing/scoring":[152],"with":[153,163,201],"Elasticsearch.":[154],"Experiments":[155],"were":[156],"conducted":[157],"comparison":[159],"baseline":[161],"approaches":[162],"respect":[164],"to:":[165],"1)":[166],"evaluation":[167,181],"on":[171,185],"quality":[173],"(relevance)":[174],"returned":[177],"results,":[178],"2)":[180],"execution":[186,206],"time":[187,242],"storage":[189],"requirements.":[190],"results":[192],"showed":[193],"5.1-23.1%":[195],"improvement":[196],"quality,":[199],"along":[200],"achieving":[202],"35%":[203],"faster":[204],"query":[205],"time.":[207,223],"Cost-wise,":[208],"required":[211],"1.5-2":[212],"times":[213,219],"larger":[214],"space":[215,244],"about":[217],"3":[218],"increase":[220,240],"indexing":[222],"higher":[225],"demonstrated":[227],"merit":[229],"into":[234],"IR,":[236],"near-constant":[239],"suggested":[245],"promising":[246],"scalability.":[247]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
