{"id":"https://openalex.org/W2913319647","doi":"https://doi.org/10.1109/bigdata.2018.8622484","title":"Knowledge-Guided Bayesian Support Vector Machine for High-Dimensional Data with Application to Analysis of Genomics Data","display_name":"Knowledge-Guided Bayesian Support Vector Machine for High-Dimensional Data with Application to Analysis of Genomics Data","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2913319647","doi":"https://doi.org/10.1109/bigdata.2018.8622484","mag":"2913319647","pmid":"https://pubmed.ncbi.nlm.nih.gov/31041431"},"language":"en","primary_location":{"id":"doi:10.1109/bigdata.2018.8622484","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata.2018.8622484","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101047343","display_name":"Wenli Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenli Sun","raw_affiliation_strings":["Department of Biostatistics, Epidemiology and Informatics The University of Pennsylvania, Philadelphia, PA, 19104","Department of Biostatistics, Epidemiology and Informatics, The University of Pennsylvania, Philadelphia, PA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Epidemiology and Informatics The University of Pennsylvania, Philadelphia, PA, 19104","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Biostatistics, Epidemiology and Informatics, The University of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021164890","display_name":"Changgee Chang","orcid":"https://orcid.org/0000-0003-3426-1295"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Changgee Chang","raw_affiliation_strings":["Department of Biostatistics, Epidemiology and Informatics The University of Pennsylvania, Philadelphia, PA, 19104","Department of Biostatistics, Epidemiology and Informatics, The University of Pennsylvania, Philadelphia, PA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Epidemiology and Informatics The University of Pennsylvania, Philadelphia, PA, 19104","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Biostatistics, Epidemiology and Informatics, The University of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083811602","display_name":"Yize Zhao","orcid":"https://orcid.org/0000-0001-6283-2302"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yize Zhao","raw_affiliation_strings":["Department of Healthcare Policy and Research Weill Cornell Medicine, Cornell University, New York, NY, 10065","Department of Healthcare Policy and Research, Cornell University, New York, NY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Healthcare Policy and Research Weill Cornell Medicine, Cornell University, New York, NY, 10065","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Healthcare Policy and Research, Cornell University, New York, NY","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002149616","display_name":"Qi Long","orcid":"https://orcid.org/0000-0003-0660-5230"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qi Long","raw_affiliation_strings":["Department of Biostatistics, Epidemiology and Informatics The University of Pennsylvania, Philadelphia, PA, 19104","Department of Biostatistics, Epidemiology and Informatics, The University of Pennsylvania, Philadelphia, PA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Epidemiology and Informatics The University of Pennsylvania, Philadelphia, PA, 19104","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Biostatistics, Epidemiology and Informatics, The University of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4639,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.64591566,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2018","issue":null,"first_page":"1484","last_page":"1493"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7478571534156799},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.7471188306808472},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6840274333953857},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6284497380256653},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5720626711845398},{"id":"https://openalex.org/keywords/frequentist-inference","display_name":"Frequentist inference","score":0.4557402729988098},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.4542948305606842},{"id":"https://openalex.org/keywords/gibbs-sampling","display_name":"Gibbs sampling","score":0.44312500953674316},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.42794176936149597},{"id":"https://openalex.org/keywords/bayesian-inference","display_name":"Bayesian inference","score":0.427584171295166},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4213620722293854},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.4137917459011078},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40637025237083435}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7478571534156799},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.7471188306808472},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6840274333953857},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6284497380256653},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5720626711845398},{"id":"https://openalex.org/C162376815","wikidata":"https://www.wikidata.org/wiki/Q2158281","display_name":"Frequentist inference","level":4,"score":0.4557402729988098},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.4542948305606842},{"id":"https://openalex.org/C158424031","wikidata":"https://www.wikidata.org/wiki/Q1191905","display_name":"Gibbs sampling","level":3,"score":0.44312500953674316},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.42794176936149597},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.427584171295166},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4213620722293854},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.4137917459011078},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40637025237083435}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bigdata.2018.8622484","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata.2018.8622484","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"},{"id":"pmid:31041431","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31041431","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data","raw_type":null},{"id":"pmh:oai:europepmc.org:5843578","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6486656","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1403651065","display_name":null,"funder_award_id":"P30 CA016520","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6559044997","display_name":null,"funder_award_id":"R01 GM124111","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W74953171","https://openalex.org/W144800816","https://openalex.org/W1531138673","https://openalex.org/W1635526310","https://openalex.org/W1749992802","https://openalex.org/W1770071703","https://openalex.org/W1968486675","https://openalex.org/W1979996936","https://openalex.org/W1982992776","https://openalex.org/W2007069447","https://openalex.org/W2017339397","https://openalex.org/W2036183522","https://openalex.org/W2039813705","https://openalex.org/W2059503458","https://openalex.org/W2068674173","https://openalex.org/W2074682976","https://openalex.org/W2098337454","https://openalex.org/W2112090892","https://openalex.org/W2116015672","https://openalex.org/W2117526678","https://openalex.org/W2124649657","https://openalex.org/W2128689695","https://openalex.org/W2130139955","https://openalex.org/W2130698119","https://openalex.org/W2135046866","https://openalex.org/W2148603752","https://openalex.org/W2149097950","https://openalex.org/W2154947819","https://openalex.org/W2161347558","https://openalex.org/W2171541130","https://openalex.org/W2182644107","https://openalex.org/W2327890929","https://openalex.org/W2742470504","https://openalex.org/W2777603218","https://openalex.org/W2963218881","https://openalex.org/W3101256146","https://openalex.org/W4246858143","https://openalex.org/W4249290437","https://openalex.org/W4300848563","https://openalex.org/W6603067368","https://openalex.org/W6605830872","https://openalex.org/W6636627454","https://openalex.org/W6637938255","https://openalex.org/W6679209496","https://openalex.org/W6679676526","https://openalex.org/W6681857271","https://openalex.org/W6742095928"],"related_works":["https://openalex.org/W88131178","https://openalex.org/W2290754432","https://openalex.org/W2332232517","https://openalex.org/W232830309","https://openalex.org/W1517763961","https://openalex.org/W2133543800","https://openalex.org/W3122927555","https://openalex.org/W2494929626","https://openalex.org/W27102384","https://openalex.org/W1990075812"],"abstract_inverted_index":{"Support":[0],"vector":[1],"machine":[2],"(SVM)":[3],"is":[4,134,144,167],"a":[5,44,79,176],"popular":[6],"classification":[7],"method":[8,103,143,166],"for":[9,108,136],"the":[10,37,40,57,62,86,93,96,105,113,121,128,170],"analysis":[11,64,171],"of":[12,15,42,65,120,141,154,172],"wide":[13],"range":[14],"data":[16,67,174],"including":[17],"big":[18],"data.":[19],"Many":[20],"SVM":[21,82,150],"methods":[22,151],"with":[23,112,148],"feature":[24,87,109,157],"selection":[25,88,119,158],"have":[26],"been":[27,69],"developed":[28],"under":[29],"frequentist":[30],"regularization":[31],"or":[32],"Bayesian":[33,81,137],"shrinkage":[34],"frameworks.":[35],"On":[36],"other":[38,126],"hand,":[39],"importance":[41],"incorporating":[43],"priori":[45],"known":[46,129],"biological":[47],"knowledge,":[48],"such":[49],"as":[50],"gene":[51,58],"pathway":[52],"information":[53],"which":[54],"stems":[55],"from":[56,175],"regulatory":[59],"network,":[60],"into":[61],"statistical":[63],"genomic":[66,173],"has":[68],"recognized":[70],"in":[71,152,159,169,182],"recent":[72],"years.":[73],"In":[74,163],"this":[75],"article,":[76],"we":[77],"propose":[78],"new":[80],"approach":[83],"that":[84,116],"enables":[85],"to":[89,124],"be":[90],"guided":[91],"by":[92],"knowledge":[94],"on":[95,127],"graphical":[97],"structure":[98],"among":[99],"predictors.":[100],"The":[101,139],"proposed":[102],"uses":[104],"spike-and-slab":[106],"prior":[107,115],"selection,":[110],"combined":[111],"Ising":[114],"encourages":[117],"group-wise":[118],"predictors":[122],"adjacent":[123],"each":[125],"graph.":[130],"Gibbs":[131],"sampling":[132],"algorithm":[133],"used":[135],"inference.":[138],"performance":[140],"our":[142,165],"evaluated":[145],"and":[146,156,187],"compared":[147],"existing":[149],"terms":[153],"prediction":[155],"extensive":[160],"simulation":[161],"settings.":[162],"addition,":[164],"illustrated":[168],"cancer":[177],"study,":[178],"demonstrating":[179],"its":[180],"advantage":[181],"generating":[183],"biologically":[184],"meaningful":[185],"results":[186],"identifying":[188],"potentially":[189],"important":[190],"features.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
