{"id":"https://openalex.org/W2914655854","doi":"https://doi.org/10.1109/bigdata.2018.8622084","title":"The Challenge of a Strong Speed-Up of a Bio-Medical Big Data Application","display_name":"The Challenge of a Strong Speed-Up of a Bio-Medical Big Data Application","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2914655854","doi":"https://doi.org/10.1109/bigdata.2018.8622084","mag":"2914655854"},"language":"en","primary_location":{"id":"doi:10.1109/bigdata.2018.8622084","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata.2018.8622084","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037092642","display_name":"Marco Strutz","orcid":null},"institutions":[{"id":"https://openalex.org/I122228004","display_name":"HTW Berlin - University of Applied Sciences","ror":"https://ror.org/01xzwj424","country_code":"DE","type":"education","lineage":["https://openalex.org/I122228004"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marco Strutz","raw_affiliation_strings":["HTW Berlin, University of Applied Sciences, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HTW Berlin, University of Applied Sciences, Berlin, Germany","institution_ids":["https://openalex.org/I122228004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088901210","display_name":"Bjoern Lindequist","orcid":null},"institutions":[{"id":"https://openalex.org/I122228004","display_name":"HTW Berlin - University of Applied Sciences","ror":"https://ror.org/01xzwj424","country_code":"DE","type":"education","lineage":["https://openalex.org/I122228004"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bjoern Lindequist","raw_affiliation_strings":["HTW Berlin, University of Applied Sciences, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HTW Berlin, University of Applied Sciences, Berlin, Germany","institution_ids":["https://openalex.org/I122228004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066730478","display_name":"Hermann Hesling","orcid":null},"institutions":[{"id":"https://openalex.org/I122228004","display_name":"HTW Berlin - University of Applied Sciences","ror":"https://ror.org/01xzwj424","country_code":"DE","type":"education","lineage":["https://openalex.org/I122228004"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hermann Hesling","raw_affiliation_strings":["HTW Berlin, University of Applied Sciences, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HTW Berlin, University of Applied Sciences, Berlin, Germany","institution_ids":["https://openalex.org/I122228004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030034618","display_name":"Achim Streit","orcid":"https://orcid.org/0000-0002-5065-469X"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Achim Streit","raw_affiliation_strings":["Steinbuch Centre for Computing (SCC), Karlsruhe Institute of Technology (KIT), Eggenstein-Leopoldshafen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Steinbuch Centre for Computing (SCC), Karlsruhe Institute of Technology (KIT), Eggenstein-Leopoldshafen, Germany","institution_ids":["https://openalex.org/I102335020"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.3514,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.83136095,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"3925","last_page":"3929"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9787999987602234,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7830520868301392},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.6751258969306946},{"id":"https://openalex.org/keywords/workstation","display_name":"Workstation","score":0.6408235430717468},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6168677806854248},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.5952057838439941},{"id":"https://openalex.org/keywords/spark","display_name":"SPARK (programming language)","score":0.5766329765319824},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5639544725418091},{"id":"https://openalex.org/keywords/computer-cluster","display_name":"Computer cluster","score":0.44608891010284424},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4144032597541809},{"id":"https://openalex.org/keywords/computer-engineering","display_name":"Computer engineering","score":0.39861631393432617},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.321674108505249},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.2830974757671356},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15027865767478943}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7830520868301392},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.6751258969306946},{"id":"https://openalex.org/C67953723","wikidata":"https://www.wikidata.org/wiki/Q192525","display_name":"Workstation","level":2,"score":0.6408235430717468},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6168677806854248},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5952057838439941},{"id":"https://openalex.org/C2781215313","wikidata":"https://www.wikidata.org/wiki/Q3493345","display_name":"SPARK (programming language)","level":2,"score":0.5766329765319824},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5639544725418091},{"id":"https://openalex.org/C29140674","wikidata":"https://www.wikidata.org/wiki/Q206637","display_name":"Computer cluster","level":2,"score":0.44608891010284424},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4144032597541809},{"id":"https://openalex.org/C113775141","wikidata":"https://www.wikidata.org/wiki/Q428691","display_name":"Computer engineering","level":1,"score":0.39861631393432617},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.321674108505249},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.2830974757671356},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15027865767478943},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bigdata.2018.8622084","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata.2018.8622084","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W74877268","https://openalex.org/W1977653087","https://openalex.org/W2027862900","https://openalex.org/W2069938004","https://openalex.org/W2111574404","https://openalex.org/W2131975293","https://openalex.org/W2155327979","https://openalex.org/W2164561142","https://openalex.org/W2622775860","https://openalex.org/W3096112228","https://openalex.org/W6679815717","https://openalex.org/W6739093825"],"related_works":["https://openalex.org/W2030862718","https://openalex.org/W4246264554","https://openalex.org/W2116693644","https://openalex.org/W3112375919","https://openalex.org/W2962431048","https://openalex.org/W2051174433","https://openalex.org/W4233648438","https://openalex.org/W2969378954","https://openalex.org/W2793083950","https://openalex.org/W328786840"],"abstract_inverted_index":{"Digital":[0],"data":[1,16,47,96,128,153],"of":[2,35,45,62,149,160,177,215,227,248],"patients":[3],"can":[4,53],"aid":[5],"a":[6,29,59,131,135,150,161,175,233],"pathologist":[7],"along":[8],"the":[9,36,43,46,147,158,186,196,203,212,246,249],"diagnostic":[10],"process":[11],"[1].":[12],"Medical":[13],"devices":[14,37],"generate":[15],"sets":[17,48,129],"that":[18,195],"are":[19,49,78,97,106,218],"processed":[20],"by":[21,156,170],"specialized":[22],"computing":[23],"applications,":[24],"which":[25],"often":[26],"run":[27,100],"on":[28,101,174,241],"single":[30,102,119],"computer.":[31],"The":[32,180,225,236,259],"resolution":[33],"power":[34],"is":[38,124,134,182,193,199,206,230,239,251,266],"increasing":[39],"steadily":[40],"and,":[41],"consequently,":[42],"volumes":[44],"also":[50],"growing":[51],"and":[52,82,112,169,188,211,232],"no":[54],"longer":[55],"be":[56,254],"analyzed":[57],"in":[58,87,220],"reasonable":[60],"amount":[61],"time.":[63],"Big":[64],"Data":[65],"tools":[66,93,105,117],"like":[67],"Apache":[68],"Spark":[69],"[2]":[70],"provide":[71],"methods":[72],"for":[73,94,130,145],"analyzing":[74,171],"data,":[75],"however,":[76],"they":[77],"not":[79,107],"directly":[80],"applicable":[81],"need":[83],"considerable":[84],"implementation":[85],"efforts,":[86],"general.":[88],"Usually,":[89],"well":[90],"established":[91],"analysis":[92],"medical":[95],"designed":[98,108],"to":[99,109,121,183,208,253],"workstations.":[103],"These":[104],"meet":[110],"current":[111],"future":[113],"challenges.":[114],"Migrating":[115],"processing":[116,133],"from":[118,185],"nodes":[120],"distributed":[122],"environments":[123],"nontrivial.":[125],"Moreover,":[126],"partitioning":[127,157],"parallel":[132],"further":[136,155],"challenge":[137],"[3].In":[138],"this":[139,228,264],"work,":[140],"we":[141],"continue":[142],"our":[143],"efforts":[144],"improving":[146],"speedup":[148],"bio-medical":[151],"big":[152],"application":[154],"images":[159],"Whole":[162],"Slide":[163],"Image":[164],"(WSI)":[165],"[4]":[166],"into":[167],"sub\u2013tiles":[168,173,217],"these":[172],"cluster":[176],"computer":[178],"nodes.":[179],"idea":[181],"benefit":[184],"divide":[187],"conquer":[189],"strategy.":[190],"However,":[191],"it":[192],"shown":[194],"score":[197,213],"parameter":[198],"determined":[200,231],"incorrectly,":[201],"when":[202,263],"software":[204,238],"package":[205],"applied":[207],"each":[209],"sub\u2013tile":[210],"parameters":[214],"all":[216],"combined":[219],"an":[221],"apparently":[222],"natural":[223],"manner.":[224],"cause":[226],"anomaly":[229,260],"solution":[234],"suggested.":[235],"original":[237],"based":[240],"implicit":[242],"assumptions.":[243],"For":[244],"example,":[245],"size":[247],"tiles":[250],"assumed":[252],"1024":[255,257],"\u00d7":[256],"px2.":[258],"shows":[261],"up":[262],"constraint":[265],"reduced.":[267]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
