{"id":"https://openalex.org/W2214234760","doi":"https://doi.org/10.1109/bigdata.2015.7363949","title":"Push-based system for molecular simulation data analysis","display_name":"Push-based system for molecular simulation data analysis","publication_year":2015,"publication_date":"2015-10-01","ids":{"openalex":"https://openalex.org/W2214234760","doi":"https://doi.org/10.1109/bigdata.2015.7363949","mag":"2214234760"},"language":"en","primary_location":{"id":"doi:10.1109/bigdata.2015.7363949","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata.2015.7363949","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080021077","display_name":"Vladimir Grupcev","orcid":null},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vladimir Grupcev","raw_affiliation_strings":["Department of Computer Science and Engineering, University of South Florida, Tampa, FL, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, Tampa, FL, U.S.A","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032673243","display_name":"Yi-Cheng Tu","orcid":"https://orcid.org/0000-0002-4062-2694"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi-Cheng Tu","raw_affiliation_strings":["Department of Computer Science and Engineering, University of South Florida, Tampa, FL, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, Tampa, FL, U.S.A","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082990123","display_name":"Joseph Fogarty","orcid":"https://orcid.org/0009-0008-3374-5232"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Joseph Fogarty","raw_affiliation_strings":["Department of Physics, University of South Florida, Tampa, FL, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Physics, University of South Florida, Tampa, FL, U.S.A","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102932940","display_name":"Sagar A. Pandit","orcid":"https://orcid.org/0000-0002-7728-9477"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sagar Pandit","raw_affiliation_strings":["Department of Physics, University of South Florida, Tampa, FL, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Physics, University of South Florida, Tampa, FL, U.S.A","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5080021077"],"corresponding_institution_ids":["https://openalex.org/I2613432"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11860498,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1775","last_page":"1784"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11106","display_name":"Data Management and Algorithms","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8441357612609863},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5891121625900269},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.5876787900924683},{"id":"https://openalex.org/keywords/systems-design","display_name":"Systems design","score":0.5020079612731934},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4839639961719513},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.42857247591018677},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3867528438568115},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37764066457748413},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.345753937959671},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1413954198360443},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.11886706948280334}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8441357612609863},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5891121625900269},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.5876787900924683},{"id":"https://openalex.org/C31352089","wikidata":"https://www.wikidata.org/wiki/Q3750474","display_name":"Systems design","level":2,"score":0.5020079612731934},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4839639961719513},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.42857247591018677},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3867528438568115},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37764066457748413},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.345753937959671},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1413954198360443},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.11886706948280334},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bigdata.2015.7363949","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata.2015.7363949","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.47999998927116394}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W157967172","https://openalex.org/W1490253884","https://openalex.org/W1605782097","https://openalex.org/W1657092947","https://openalex.org/W1663272054","https://openalex.org/W1964941055","https://openalex.org/W1966078827","https://openalex.org/W1975353473","https://openalex.org/W1981607938","https://openalex.org/W1982631489","https://openalex.org/W1983720668","https://openalex.org/W1987163291","https://openalex.org/W2001787833","https://openalex.org/W2014830756","https://openalex.org/W2017369298","https://openalex.org/W2017707167","https://openalex.org/W2020165513","https://openalex.org/W2029667189","https://openalex.org/W2031794121","https://openalex.org/W2038885675","https://openalex.org/W2040263621","https://openalex.org/W2044012461","https://openalex.org/W2054652150","https://openalex.org/W2056657832","https://openalex.org/W2063388849","https://openalex.org/W2084961399","https://openalex.org/W2089586983","https://openalex.org/W2091940856","https://openalex.org/W2100099053","https://openalex.org/W2107110814","https://openalex.org/W2112312025","https://openalex.org/W2117538598","https://openalex.org/W2132262459","https://openalex.org/W2139561304","https://openalex.org/W2150208547","https://openalex.org/W2150606131","https://openalex.org/W2155898952","https://openalex.org/W2170711116","https://openalex.org/W2171468534","https://openalex.org/W2987958920","https://openalex.org/W3021480969","https://openalex.org/W3138135046","https://openalex.org/W3216100919","https://openalex.org/W4211017051","https://openalex.org/W4256267254","https://openalex.org/W4297927382","https://openalex.org/W4302607467","https://openalex.org/W6606400306","https://openalex.org/W6634624844","https://openalex.org/W6636980721","https://openalex.org/W6650933186","https://openalex.org/W6673060236","https://openalex.org/W6676748899","https://openalex.org/W6680878861","https://openalex.org/W6683418556"],"related_works":["https://openalex.org/W4390608645","https://openalex.org/W4247566972","https://openalex.org/W4394895745","https://openalex.org/W2960264696","https://openalex.org/W3090563135","https://openalex.org/W2497432351","https://openalex.org/W2078379271","https://openalex.org/W2043460294","https://openalex.org/W4210712718","https://openalex.org/W1905398909"],"abstract_inverted_index":{"Many":[0],"scientific":[1,11,104],"fields":[2],"generate,":[3],"and":[4,73,89,129,160,180,236],"require":[5],"manipulation":[6],"of":[7,43,48,54,66,103,141,162,178,183,201,210,220,227,239],"big":[8],"data.":[9,68,216],"Known":[10],"data":[12,31,49,79,98,124,137,165,179,196,245],"analysis":[13,63,99],"systems,":[14],"as":[15,17],"well":[16],"traditional":[18,38],"DBMSs,":[19],"follow":[20],"a":[21,91,116,139,163],"pull-based":[22],"architectural":[23],"design,":[24,34],"where":[25,41],"the":[26,30,55,67,78,82,101,123,126,132,135,147,150,156,176,181,194,202,208,228,234,237],"executed":[27,184],"queries":[28,44],"mandate":[29],"needed.":[32],"This":[33],"while":[35],"suitable":[36],"for":[37,59,244],"transaction-based":[39],"workloads":[40],"number":[42,140,182],"retrieve":[45],"small":[46],"parts":[47],"located":[50],"at":[51],"various":[52],"places":[53],"database,":[56],"is":[57,205],"ill-fitted":[58],"applications":[60],"involving":[61],"complex":[62],"on":[64],"most":[65],"Such":[69],"design":[70,88,107],"involves":[71],"redundant":[72],"random":[74],"I/O,":[75],"considerably":[76],"affecting":[77],"throughput":[80,109],"in":[81,100,110],"system.":[83,230],"In":[84],"this":[85,145],"paper,":[86],"we":[87,186],"implement":[90],"push-based":[92,242],"type":[93],"system":[94,133,148,189,204,222,243,246],"that":[95,121,161],"allows":[96],"high-throughput":[97],"process":[102],"discovery.":[105],"Our":[106],"improves":[108],"two":[111],"ways:":[112],"i)":[113],"it":[114],"uses":[115],"sequential":[117],"scan-based":[118],"I/O":[119,152],"framework":[120],"loads":[122],"into":[125],"main":[127],"memory,":[128],"then":[130],"ii)":[131],"pushes":[134],"loaded":[136],"to":[138,171,225],"pre-programmed":[142],"queries.":[143],"By":[144],"way":[146],"lowers":[149],"unnecessary":[151],"overhead":[153],"imposed":[154],"by":[155,207],"randomized,":[157],"index-based":[158],"scan":[159],"multiple":[164],"reads":[166],"if":[167],"each":[168],"query":[169],"were":[170],"be":[172],"fed":[173],"separately.":[174],"Considering":[175],"amount":[177],"queries,":[185],"believe":[187],"our":[188,221],"provides":[190],"substantial":[191],"improvement":[192],"over":[193],"current":[195],"analyzing":[197],"systems.":[198],"The":[199,217,231],"efficiency":[200],"proposed":[203],"backed":[206],"results":[209],"extensive":[211],"experiments":[212],"using":[213,240],"real":[214],"MS":[215],"running":[218],"times":[219],"are":[223],"compared":[224],"those":[226],"GROMACS":[229],"comparison":[232],"shows":[233],"advantage":[235],"potential":[238],"such":[241],"analysis.":[247]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
