{"id":"https://openalex.org/W2004032825","doi":"https://doi.org/10.1109/bigdata.2014.7004341","title":"Data mining and sharing tool for high content screening large scale biological image data","display_name":"Data mining and sharing tool for high content screening large scale biological image data","publication_year":2014,"publication_date":"2014-10-01","ids":{"openalex":"https://openalex.org/W2004032825","doi":"https://doi.org/10.1109/bigdata.2014.7004341","mag":"2004032825"},"language":"en","primary_location":{"id":"doi:10.1109/bigdata.2014.7004341","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata.2014.7004341","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019977685","display_name":"Asmi H. Shah","orcid":null},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Asmi H. Shah","raw_affiliation_strings":["Karlsruhe Institute of Technology, Karlsruhe, Germany","Lets Nurture Inc., India","MGH, Harvard Medical School, Massachusetts, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]},{"raw_affiliation_string":"Lets Nurture Inc., India","institution_ids":[]},{"raw_affiliation_string":"MGH, Harvard Medical School, Massachusetts, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113551492","display_name":"Gayathri Gopalakrishnan","orcid":null},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gayathri Gopalakrishnan","raw_affiliation_strings":["Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005687085","display_name":"Adithya Rajendran","orcid":null},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Adithya Rajendran","raw_affiliation_strings":["Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029527657","display_name":"Urban Liebel","orcid":null},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Urban Liebel","raw_affiliation_strings":["Acquifer AG, Karlsruhe, Germany","Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Acquifer AG, Karlsruhe, Germany","institution_ids":[]},{"raw_affiliation_string":"Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.03644392,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"24","issue":null,"first_page":"1068","last_page":"1076"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9697999954223633,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8069028854370117},{"id":"https://openalex.org/keywords/terabyte","display_name":"Terabyte","score":0.7701313495635986},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6686415076255798},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5755633115768433},{"id":"https://openalex.org/keywords/petabyte","display_name":"Petabyte","score":0.5456280708312988},{"id":"https://openalex.org/keywords/publication","display_name":"Publication","score":0.5411985516548157},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5315007567405701},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5179423689842224},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4756702482700348},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4495118260383606},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4371083974838257},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43267592787742615},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.41009721159935},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3788885474205017},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.3523658812046051},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34132540225982666},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.16082125902175903},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10827291011810303}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8069028854370117},{"id":"https://openalex.org/C199683683","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Terabyte","level":2,"score":0.7701313495635986},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6686415076255798},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5755633115768433},{"id":"https://openalex.org/C13600138","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Petabyte","level":3,"score":0.5456280708312988},{"id":"https://openalex.org/C41458344","wikidata":"https://www.wikidata.org/wiki/Q732577","display_name":"Publication","level":2,"score":0.5411985516548157},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5315007567405701},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5179423689842224},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4756702482700348},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4495118260383606},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4371083974838257},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43267592787742615},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.41009721159935},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3788885474205017},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.3523658812046051},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34132540225982666},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16082125902175903},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10827291011810303},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C112698675","wikidata":"https://www.wikidata.org/wiki/Q37038","display_name":"Advertising","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bigdata.2014.7004341","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata.2014.7004341","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE International Conference on Big Data (Big Data)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1844177","https://openalex.org/W1687157824","https://openalex.org/W1885831765","https://openalex.org/W1976443465","https://openalex.org/W1979900513","https://openalex.org/W1996649210","https://openalex.org/W2009766076","https://openalex.org/W2018227909","https://openalex.org/W2023116290","https://openalex.org/W2033300642","https://openalex.org/W2037947871","https://openalex.org/W2043213524","https://openalex.org/W2047864778","https://openalex.org/W2055351791","https://openalex.org/W2056476797","https://openalex.org/W2062972089","https://openalex.org/W2065119389","https://openalex.org/W2065455422","https://openalex.org/W2071569137","https://openalex.org/W2076280967","https://openalex.org/W2092543424","https://openalex.org/W2115830123","https://openalex.org/W2122682542","https://openalex.org/W2124889025","https://openalex.org/W2125121861","https://openalex.org/W2125183513","https://openalex.org/W2128476487","https://openalex.org/W2136773811","https://openalex.org/W2141941960","https://openalex.org/W2154917588","https://openalex.org/W2163314583","https://openalex.org/W2166445532","https://openalex.org/W2167279371","https://openalex.org/W2168166653","https://openalex.org/W2615147949","https://openalex.org/W2789353489","https://openalex.org/W3142609019","https://openalex.org/W4244387630"],"related_works":["https://openalex.org/W1538652242","https://openalex.org/W2011521129","https://openalex.org/W4379164835","https://openalex.org/W2461968736","https://openalex.org/W4386544342","https://openalex.org/W1971438544","https://openalex.org/W2481053450","https://openalex.org/W4390503034","https://openalex.org/W2034909456","https://openalex.org/W2514911858"],"abstract_inverted_index":{"The":[0],"constantly":[1],"developing":[2],"high":[3,6],"content":[4],"and":[5,13,44,64,87,96,124,145,167,182,253,295,301,323],"throughput":[7],"screening":[8],"(HCS":[9],"&":[10],"HTS)":[11],"microscopy":[12],"next":[14],"generation":[15],"sequencing":[16],"technologies":[17],"routinely":[18],"produce":[19],"experiment":[20,242],"datasets":[21,265],"in":[22,31,93,154,210],"the":[23,47,51,72,79,113,118,129,160,168,189,198,207,218,246,275,280,288,318,321,325,330],"terabyte":[24],"(TB)":[25],"or":[26,270],"petabyte":[27],"(PB)":[28],"range":[29],"resulting":[30],"millions":[32],"of":[33,71,74,85,91,112,175,178,220,250,258,283,310],"data":[34,60,127,148,209,243,251,294,311,322,326],"files":[35],"that":[36],"can":[37,261,286],"vary":[38],"from":[39,120,188],"simply":[40],"numbers":[41],"to":[42,104,108,137,140,193,205,217,228,236,245,274,303,320,329],"signals":[43],"images.":[45],"If":[46],"collaborators":[48,269],"working":[49],"on":[50,150,159,244],"same":[52],"project":[53],"are":[54,83,171],"spread":[55],"over":[56],"large":[57,125,239],"geographical":[58],"distances,":[59],"sharing,":[61],"interactive":[62],"visualization":[63,254],"collaborative":[65],"annotation":[66],"techniques":[67],"become":[68],"important":[69],"determinants":[70],"success":[73],"a":[75,151,202,226],"research":[76],"project.":[77],"On":[78],"other":[80,161,304],"hand,":[81,162],"there":[82],"hundreds":[84],"bioinformatic":[86],"cheminformatic":[88],"databases,":[89],"billions":[90],"documents":[92],"available":[94],"literature,":[95],"many":[97],"image":[98],"based":[99],"biological":[100,165,241],"repositories,":[101],"which":[102],"need":[103],"be":[105,133],"referred":[106],"simultaneously":[107],"make":[109,324],"sense":[110],"out":[111],"acquired":[114],"data.":[115],"To":[116],"draw":[117],"conclusions":[119],"such":[121],"increasingly":[122],"complex":[123],"scale":[126,240],"sources,":[128],"scientific":[130,277],"community":[131],"must":[132],"provided":[134],"with":[135,173,267],"simple":[136,227],"use":[138,174,229,249,257],"methods":[139],"retrieve,":[141],"analyze,":[142],"visualize,":[143],"annotate,":[144],"crosslink":[146],"these":[147,163,211,263,314],"sources":[149],"common":[152],"platform":[153,204],"an":[155,176],"efficient":[156],"manner.":[157],"However,":[158],"modern":[164],"experiments":[166],"subsequent":[169],"analyses":[170],"completed":[172],"array":[177],"different":[179],"software":[180,203,230],"suites":[181],"automated":[183],"tools.":[184],"A":[185],"constant":[186],"feedback":[187],"experimenter":[190],"is":[191],"needed":[192],"change":[194],"experimental":[195,289],"paradigms":[196],"for":[197,234],"follow-up":[199],"experiments.":[200],"Such":[201],"address":[206],"HCS":[208,264],"aspects":[212],"does":[213],"not":[214],"exist":[215],"yet,":[216],"best":[219],"our":[221],"knowledge.":[222],"We":[223],"have":[224],"developed":[225],"package":[231],"called":[232],"\u201cAskMe\u201d":[233],"users":[235,331],"publish":[237],"their":[238,268],"web":[247],"by":[248,292],"mining":[252,293],"concepts.":[255],"With":[256],"AskMe,":[259],"scientists":[260],"share":[262],"easily":[266],"made":[271],"publicly":[272],"accessible":[273],"whole":[276],"community.":[278],"From":[279],"initial":[281],"stages":[282],"experiments,":[284],"AskMe":[285],"ease":[287],"analysis":[290],"process":[291],"providing":[296],"useful":[297],"visualizations.":[298],"Moreover,":[299],"integration":[300],"crosslinks":[302],"databases":[305],"also":[306],"allow":[307],"easy":[308],"evaluation":[309],"generated.":[312],"By":[313],"principles,":[315],"we":[316],"bring":[317],"tools":[319],"access":[327],"transparent":[328],"without":[332],"any":[333],"capacity":[334],"tradeoff.":[335]},"counts_by_year":[{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
