{"id":"https://openalex.org/W3018260322","doi":"https://doi.org/10.1109/bigcomp48618.2020.00-54","title":"A Drug-Induced Liver Injury Prediction Model using Transcriptional Response Data with Graph Neural Network","display_name":"A Drug-Induced Liver Injury Prediction Model using Transcriptional Response Data with Graph Neural Network","publication_year":2020,"publication_date":"2020-02-01","ids":{"openalex":"https://openalex.org/W3018260322","doi":"https://doi.org/10.1109/bigcomp48618.2020.00-54","mag":"3018260322"},"language":"en","primary_location":{"id":"doi:10.1109/bigcomp48618.2020.00-54","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigcomp48618.2020.00-54","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Big Data and Smart Computing (BigComp)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101889043","display_name":"Doyeong Hwang","orcid":"https://orcid.org/0000-0002-1452-9023"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Doyeong Hwang","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University, Seoul, Republic of Korea","Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003685784","display_name":"Minji Jeon","orcid":"https://orcid.org/0000-0001-5731-6186"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Minji Jeon","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University, Seoul, Republic of Korea","Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076917278","display_name":"Jaewoo Kang","orcid":"https://orcid.org/0000-0001-6798-9106"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jaewoo Kang","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University, Seoul, Republic of Korea","Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101889043"],"corresponding_institution_ids":["https://openalex.org/I197347611"],"apc_list":null,"apc_paid":null,"fwci":0.7036,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.7549596,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"323","last_page":"329"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11465","display_name":"Drug-Induced Hepatotoxicity and Protection","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.7243983149528503},{"id":"https://openalex.org/keywords/liver-injury","display_name":"Liver injury","score":0.6917583346366882},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4997377395629883},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.484953910112381},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4597056806087494},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45805323123931885},{"id":"https://openalex.org/keywords/clinical-trial","display_name":"Clinical trial","score":0.4323016405105591},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.411589115858078},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3191072940826416},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.2725525498390198},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2520786225795746},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.157215416431427},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.12588977813720703},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1227470338344574}],"concepts":[{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.7243983149528503},{"id":"https://openalex.org/C2776637226","wikidata":"https://www.wikidata.org/wiki/Q6658207","display_name":"Liver injury","level":2,"score":0.6917583346366882},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4997377395629883},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.484953910112381},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4597056806087494},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45805323123931885},{"id":"https://openalex.org/C535046627","wikidata":"https://www.wikidata.org/wiki/Q30612","display_name":"Clinical trial","level":2,"score":0.4323016405105591},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.411589115858078},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3191072940826416},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.2725525498390198},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2520786225795746},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.157215416431427},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.12588977813720703},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1227470338344574}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bigcomp48618.2020.00-54","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigcomp48618.2020.00-54","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Big Data and Smart Computing (BigComp)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5199999809265137,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1521626043","https://openalex.org/W2029657547","https://openalex.org/W2087561463","https://openalex.org/W2099536383","https://openalex.org/W2123590494","https://openalex.org/W2163485494","https://openalex.org/W2167980479","https://openalex.org/W2170381017","https://openalex.org/W2274985999","https://openalex.org/W2397757171","https://openalex.org/W2519887557","https://openalex.org/W2557833574","https://openalex.org/W2559588208","https://openalex.org/W2612467560","https://openalex.org/W2618135456","https://openalex.org/W2731260319","https://openalex.org/W2765224015","https://openalex.org/W2766857231","https://openalex.org/W2771073546","https://openalex.org/W2786016794","https://openalex.org/W2793838702","https://openalex.org/W2860192827","https://openalex.org/W2897042574","https://openalex.org/W2914415092","https://openalex.org/W2950356072","https://openalex.org/W2952631022","https://openalex.org/W2957050889","https://openalex.org/W2962767366","https://openalex.org/W2963017945","https://openalex.org/W2963403868","https://openalex.org/W2963858333","https://openalex.org/W2964113829","https://openalex.org/W3100751385"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4210854019","https://openalex.org/W1536168699","https://openalex.org/W3134486170","https://openalex.org/W3216512054","https://openalex.org/W2936852653","https://openalex.org/W2017706934","https://openalex.org/W2617085726","https://openalex.org/W3022998913"],"abstract_inverted_index":{"Drug-Induced":[0],"Liver":[1],"Injury":[2],"(DILI)":[3],"is":[4,98,107],"a":[5,74,93,96,108,145,154,184],"major":[6],"cause":[7,77],"of":[8,17,36,67,92,132,169,193],"failed":[9],"drug":[10,37,40,75,94,133,160],"candidates":[11,41],"in":[12,31,144,167,195],"clinical":[13,54],"trials":[14],"and":[15,115,118,135,165,174],"withdrawal":[16],"approved":[18],"drugs":[19],"from":[20],"the":[21,33,64,89,129,190,196],"market.":[22],"Therefore,":[23],"machine":[24],"learning-based":[25],"DILI":[26,58,85,198],"prediction":[27,59,86],"can":[28,50,119],"be":[29,51,120],"key":[30],"increasing":[32],"success":[34],"rate":[35,172],"discovery":[38],"because":[39],"that":[42,110,157],"are":[43,203],"predicted":[44,200],"to":[45,187],"potentially":[46],"induce":[47],"liver":[48,78,124],"injury":[49,79,125],"rejected":[52],"before":[53],"trials.":[55],"However,":[56],"existing":[57],"models":[60],"mainly":[61],"focus":[62],"on":[63,82,88,95],"chemical":[65,116],"structures":[66,117,134],"drugs.":[68],"Since":[69],"we":[70,103,182],"cannot":[71],"determine":[72],"whether":[73,189],"will":[76],"based":[80,87],"solely":[81],"its":[83],"structure,":[84],"transcriptional":[90,112],"effect":[91],"cell":[97],"necessary.":[99],"In":[100,180],"this":[101],"paper,":[102],"propose":[104],"GLIT":[105,127,152,202],"which":[106],"model":[109,156],"uses":[111,158],"response":[113],"data":[114],"used":[121],"for":[122,149],"drug-induced":[123,136],"prediction.":[126],"learns":[128],"embedding":[130],"vectors":[131],"gene":[137],"expression":[138],"profiles":[139],"using":[140],"graph":[141,148],"attention":[142],"networks":[143],"biological":[146],"knowledge":[147],"predicting":[150],"DILI.":[151],"outperformed":[153],"baseline":[155],"only":[159],"structure":[161],"information":[162],"by":[163,201],"7%":[164],"19.2%":[166],"terms":[168],"correct":[170],"classification":[171],"(CCR)":[173],"Matthews":[175],"correlation":[176],"coefficient":[177],"(MCC),":[178],"respectively.":[179],"addition,":[181],"conducted":[183],"literature":[185],"survey":[186],"confirm":[188],"class":[191],"labels":[192],"drugs,":[194],"unknown":[197],"class,":[199],"correct.":[204]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":4}],"updated_date":"2026-02-15T05:58:04.055770","created_date":"2025-10-10T00:00:00"}
