{"id":"https://openalex.org/W2602257698","doi":"https://doi.org/10.1109/bigcomp.2017.7881723","title":"SSL: Inferring disease-related genes using sentence structure and literature data","display_name":"SSL: Inferring disease-related genes using sentence structure and literature data","publication_year":2017,"publication_date":"2017-02-01","ids":{"openalex":"https://openalex.org/W2602257698","doi":"https://doi.org/10.1109/bigcomp.2017.7881723","mag":"2602257698"},"language":"en","primary_location":{"id":"doi:10.1109/bigcomp.2017.7881723","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigcomp.2017.7881723","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Big Data and Smart Computing (BigComp)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101860937","display_name":"Jeongwoo Kim","orcid":"https://orcid.org/0000-0001-9417-536X"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Jeongwoo Kim","raw_affiliation_strings":["Yonsei University, Seodaemun-gu, Seoul, KR"],"affiliations":[{"raw_affiliation_string":"Yonsei University, Seodaemun-gu, Seoul, KR","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083795279","display_name":"Won Gi Choi","orcid":"https://orcid.org/0000-0001-7793-4651"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Won Gi Choi","raw_affiliation_strings":["Yonsei University, Seodaemun-gu, Seoul, KR"],"affiliations":[{"raw_affiliation_string":"Yonsei University, Seodaemun-gu, Seoul, KR","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086413828","display_name":"Jungrim Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jungrim Kim","raw_affiliation_strings":["Yonsei University, Seodaemun-gu, Seoul, KR"],"affiliations":[{"raw_affiliation_string":"Yonsei University, Seodaemun-gu, Seoul, KR","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100440934","display_name":"Sang Hyun Park","orcid":"https://orcid.org/0000-0003-0612-2562"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sanghyun Park","raw_affiliation_strings":["Yonsei University, Seodaemun-gu, Seoul, KR"],"affiliations":[{"raw_affiliation_string":"Yonsei University, Seodaemun-gu, Seoul, KR","institution_ids":["https://openalex.org/I193775966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101860937"],"corresponding_institution_ids":["https://openalex.org/I193775966"],"apc_list":null,"apc_paid":null,"fwci":0.1063,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.46401565,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"78","issue":null,"first_page":"100","last_page":"107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6664128303527832},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.6420720219612122},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5713691115379333},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5478357076644897},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48796290159225464},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.37593287229537964},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25751248002052307},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1752772033214569},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14821156859397888},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11361396312713623}],"concepts":[{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6664128303527832},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.6420720219612122},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5713691115379333},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5478357076644897},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48796290159225464},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.37593287229537964},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25751248002052307},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1752772033214569},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14821156859397888},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11361396312713623}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bigcomp.2017.7881723","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigcomp.2017.7881723","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Conference on Big Data and Smart Computing (BigComp)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.5299999713897705,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W128719466","https://openalex.org/W1996430422","https://openalex.org/W2003458432","https://openalex.org/W2010768718","https://openalex.org/W2014849717","https://openalex.org/W2033441600","https://openalex.org/W2036178129","https://openalex.org/W2038122249","https://openalex.org/W2053039860","https://openalex.org/W2054473834","https://openalex.org/W2119382294","https://openalex.org/W2132773777","https://openalex.org/W2146925231","https://openalex.org/W2156750171","https://openalex.org/W2159482845","https://openalex.org/W2165958420","https://openalex.org/W2167269995","https://openalex.org/W2168905447","https://openalex.org/W2297700762","https://openalex.org/W6605288046"],"related_works":["https://openalex.org/W2375873920","https://openalex.org/W2146114872","https://openalex.org/W2392060890","https://openalex.org/W2392760275","https://openalex.org/W2083530853","https://openalex.org/W2009831055","https://openalex.org/W2393172683","https://openalex.org/W3211744874","https://openalex.org/W1994626569","https://openalex.org/W2368686738"],"abstract_inverted_index":{"Text":[0],"mining":[1],"is":[2],"widely":[3],"applied":[4,99],"in":[5,144],"biology":[6],"to":[7,19,102,133],"infer":[8],"relationships":[9,16],"between":[10,78],"biological":[11],"entities.":[12],"In":[13],"biology,":[14],"disease-gene":[15,96],"are":[17],"important":[18],"discover":[20],"the":[21,46,50,76,85,88,121],"cause":[22],"of":[23,52,87,95],"disease.":[24],"Therefore,":[25],"we":[26,90,119],"propose":[27],"a":[28],"useful":[29,70,93],"method":[30,48,68,101,130],"called":[31],"SSL,":[32],"which":[33],"infers":[34,57],"disease-related":[35,54,60,146],"genes,":[36],"using":[37],"sentence":[38,44],"structure":[39,86],"and":[40,56,81,114,140],"literature":[41],"data.":[42],"Using":[43],"structure,":[45],"proposed":[47],"decreases":[49],"number":[51],"candidate":[53],"genes":[55,61,125],"more":[58],"meaningful":[59],"than":[62,137],"other":[63],"comparable":[64],"methods.":[65],"Furthermore,":[66],"our":[67,100],"extracts":[69],"sentences":[71],"that":[72],"have":[73],"information":[74],"on":[75],"relationship":[77],"specific":[79],"diseases":[80],"genes.":[82,147],"By":[83],"analyzing":[84],"sentences,":[89],"can":[91],"obtain":[92],"knowledge":[94],"relationships.":[97],"We":[98],"five":[103,127],"diseases,":[104],"including":[105],"Alzheimer's":[106],"disease,":[107],"prostate":[108],"cancer,":[109,111,113],"gastric":[110],"colorectal":[112],"lung":[115],"cancer.":[116],"For":[117],"validation,":[118],"investigated":[120],"top":[122],"10":[123],"inferred":[124],"for":[126],"diseases.":[128],"Our":[129],"demonstrated":[131],"up":[132],"50%":[134],"higher":[135],"precision":[136],"existing":[138],"methods,":[139],"showed":[141],"98%":[142],"accuracy":[143],"inferring":[145]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
