{"id":"https://openalex.org/W2089226240","doi":"https://doi.org/10.1109/bicta.2010.5645292","title":"Insights into the combinatorial effects of histone modifications in yeast using association rule mining","display_name":"Insights into the combinatorial effects of histone modifications in yeast using association rule mining","publication_year":2010,"publication_date":"2010-09-01","ids":{"openalex":"https://openalex.org/W2089226240","doi":"https://doi.org/10.1109/bicta.2010.5645292","mag":"2089226240"},"language":"en","primary_location":{"id":"doi:10.1109/bicta.2010.5645292","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bicta.2010.5645292","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057122958","display_name":"Jiang Wang","orcid":"https://orcid.org/0000-0001-9269-0894"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiang Wang","raw_affiliation_strings":["Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072181764","display_name":"Xianhua Dai","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianhua Dai","raw_affiliation_strings":["Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101880950","display_name":"Qian Xiang","orcid":"https://orcid.org/0000-0002-5478-8636"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qian Xiang","raw_affiliation_strings":["Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043461307","display_name":"Yangyang Deng","orcid":"https://orcid.org/0000-0001-9981-1425"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yangyang Deng","raw_affiliation_strings":["Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112662451","display_name":"Jihua Feng","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jihua Feng","raw_affiliation_strings":["Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103089044","display_name":"Zhiming Dai","orcid":"https://orcid.org/0000-0001-6211-6568"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiming Dai","raw_affiliation_strings":["Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019232565","display_name":"Caisheng He","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Caisheng He","raw_affiliation_strings":["Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"Department of Electronics & Communications Engineering, School of Information Science and Technology, Sun Yat-Sen University, 135 West Xin'gang Road, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I157773358"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"117","issue":null,"first_page":"11","last_page":"15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.7580821514129639},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6405526399612427},{"id":"https://openalex.org/keywords/histone-code","display_name":"Histone code","score":0.6153517365455627},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.5296435356140137},{"id":"https://openalex.org/keywords/histone-h2a","display_name":"Histone H2A","score":0.5191377997398376},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4718713164329529},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4208475947380066},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35835176706314087},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27265143394470215},{"id":"https://openalex.org/keywords/nucleosome","display_name":"Nucleosome","score":0.1477607786655426}],"concepts":[{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.7580821514129639},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6405526399612427},{"id":"https://openalex.org/C10058791","wikidata":"https://www.wikidata.org/wiki/Q910897","display_name":"Histone code","level":5,"score":0.6153517365455627},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.5296435356140137},{"id":"https://openalex.org/C56428682","wikidata":"https://www.wikidata.org/wiki/Q24785535","display_name":"Histone H2A","level":4,"score":0.5191377997398376},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4718713164329529},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4208475947380066},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35835176706314087},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27265143394470215},{"id":"https://openalex.org/C84772758","wikidata":"https://www.wikidata.org/wiki/Q271794","display_name":"Nucleosome","level":4,"score":0.1477607786655426}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bicta.2010.5645292","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bicta.2010.5645292","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1979187818","https://openalex.org/W1985180051","https://openalex.org/W1996358062","https://openalex.org/W2002698073","https://openalex.org/W2005928381","https://openalex.org/W2014937237","https://openalex.org/W2030637684","https://openalex.org/W2042249135","https://openalex.org/W2044947639","https://openalex.org/W2047574433","https://openalex.org/W2089689396","https://openalex.org/W2096083625","https://openalex.org/W2103302926","https://openalex.org/W2126382449","https://openalex.org/W2133452708","https://openalex.org/W2158747282","https://openalex.org/W2161827767","https://openalex.org/W2163585426","https://openalex.org/W2165997146"],"related_works":["https://openalex.org/W98379584","https://openalex.org/W2413824894","https://openalex.org/W2055566470","https://openalex.org/W4225831698","https://openalex.org/W3198436517","https://openalex.org/W1607718650","https://openalex.org/W2275638709","https://openalex.org/W3147647687","https://openalex.org/W1983211866","https://openalex.org/W2324198892"],"abstract_inverted_index":{"Eukaryotic":[0],"genomes":[1],"are":[2,130],"packaged":[3],"into":[4],"chromatin":[5],"by":[6,76,132],"histone":[7,18,46,58,74,100,113,141,156,169],"proteins":[8],"whose":[9],"chemical":[10],"modification":[11,101,114,125,170],"can":[12],"profoundly":[13],"influence":[14],"gene":[15,29,146],"expression.":[16,30,147],"The":[17,80],"modifications":[19,59,75,142,157],"often":[20],"act":[21],"in":[22,106,151],"combinations,":[23],"which":[24,129,143,172],"exert":[25],"different":[26,109],"effects":[27,72,139],"on":[28,60,116,137],"Although":[31],"a":[32,61,66,122],"number":[33,123],"of":[34,73,112,124,128,140],"experimental":[35],"techniques":[36],"and":[37,88,95,120,158,178],"data":[38],"analysis":[39],"methods":[40,97],"have":[41],"been":[42],"developed":[43],"to":[44,53,68,98],"study":[45],"modifications,":[47],"it":[48],"is":[49],"still":[50],"very":[51],"difficult":[52],"identify":[54,69,99],"the":[55,70],"relationships":[56],"among":[57,155],"genome-wide":[62],"scale.":[63],"We":[64,135],"proposed":[65],"method":[67,81,104,149],"combinatorial":[71,138],"association":[77,91],"rule":[78,92],"mining.":[79],"first":[82],"identified":[83],"Functional":[84],"Modification":[85],"Transactions":[86],"(FMTs)":[87],"then":[89],"employed":[90],"mining":[93],"algorithm":[94],"statistics":[96],"patterns.":[102,163],"Our":[103,148,164],"succeeds":[105,150],"revealing":[107],"two":[108,117],"global":[110],"views":[111],"landscapes":[115],"distinct":[118],"datasets":[119],"identifying":[121,152],"patterns":[126,171],"some":[127],"supported":[131],"previous":[133],"studies.":[134],"concentrate":[136],"significantly":[144],"affect":[145],"known":[153],"interactions":[154],"uncovering":[159],"many":[160],"previously":[161],"unknown":[162],"results":[165],"also":[166],"demonstrate":[167],"several":[168],"show":[173],"significant":[174],"correspondence":[175],"between":[176],"yeast":[177],"human":[179],"cells.":[180]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
