{"id":"https://openalex.org/W2089276670","doi":"https://doi.org/10.1109/bicta.2010.5645120","title":"Porting Molecular Dynamics simulation to heterogeneous multi-core architecture","display_name":"Porting Molecular Dynamics simulation to heterogeneous multi-core architecture","publication_year":2010,"publication_date":"2010-09-01","ids":{"openalex":"https://openalex.org/W2089276670","doi":"https://doi.org/10.1109/bicta.2010.5645120","mag":"2089276670"},"language":"en","primary_location":{"id":"doi:10.1109/bicta.2010.5645120","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bicta.2010.5645120","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106072172","display_name":"Guofu Feng","orcid":null},"institutions":[{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guofu Feng","raw_affiliation_strings":["School of Information, Shanghai Ocean University, Shanghai, China","School of Information, Shanghai Ocean University, 999 Hucheng Ring Road, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information, Shanghai Ocean University, Shanghai, China","institution_ids":["https://openalex.org/I44675526"]},{"raw_affiliation_string":"School of Information, Shanghai Ocean University, 999 Hucheng Ring Road, China","institution_ids":["https://openalex.org/I44675526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060371153","display_name":"Chi Zhang","orcid":"https://orcid.org/0000-0003-3648-5882"},"institutions":[{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chi Zhang","raw_affiliation_strings":["School of Information, Shanghai Ocean University, Shanghai, China","School of Information, Shanghai Ocean University, 999 Hucheng Ring Road, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information, Shanghai Ocean University, Shanghai, China","institution_ids":["https://openalex.org/I44675526"]},{"raw_affiliation_string":"School of Information, Shanghai Ocean University, 999 Hucheng Ring Road, China","institution_ids":["https://openalex.org/I44675526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101780579","display_name":"Dongmei Huang","orcid":"https://orcid.org/0000-0001-6930-2136"},"institutions":[{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongmei Huang","raw_affiliation_strings":["School of Information, Shanghai Ocean University, Shanghai, China","School of Information, Shanghai Ocean University, 999 Hucheng Ring Road, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information, Shanghai Ocean University, Shanghai, China","institution_ids":["https://openalex.org/I44675526"]},{"raw_affiliation_string":"School of Information, Shanghai Ocean University, 999 Hucheng Ring Road, China","institution_ids":["https://openalex.org/I44675526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100332436","display_name":"Xiaoshe Dong","orcid":"https://orcid.org/0000-0002-9003-2625"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoshe Dong","raw_affiliation_strings":["School of Electronic and Information Engineering, Xi'an Jiaotong University, China","School of Electronic and Information Engineering, Xi\u00bfan Jiaotong University, 710049 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronic and Information Engineering, Xi'an Jiaotong University, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Electronic and Information Engineering, Xi\u00bfan Jiaotong University, 710049 China","institution_ids":["https://openalex.org/I87445476"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1482342,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"23","issue":null,"first_page":"1005","last_page":"1009"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10829","display_name":"Interconnection Networks and Systems","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/porting","display_name":"Porting","score":0.963640570640564},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.838178277015686},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.6536242961883545},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.5514305233955383},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.5210803747177124},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5103124976158142},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4985332489013672},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.41461434960365295},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3940345048904419},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.3359696865081787},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.18474364280700684},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12083691358566284}],"concepts":[{"id":"https://openalex.org/C106251023","wikidata":"https://www.wikidata.org/wiki/Q851989","display_name":"Porting","level":3,"score":0.963640570640564},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.838178277015686},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.6536242961883545},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.5514305233955383},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.5210803747177124},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5103124976158142},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4985332489013672},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.41461434960365295},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3940345048904419},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.3359696865081787},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.18474364280700684},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12083691358566284},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bicta.2010.5645120","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bicta.2010.5645120","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6700000166893005,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1575732703","https://openalex.org/W2006748749","https://openalex.org/W2027437992","https://openalex.org/W2030605050","https://openalex.org/W2032309817","https://openalex.org/W2057054012","https://openalex.org/W2093381148","https://openalex.org/W2103815459","https://openalex.org/W2124880437","https://openalex.org/W2148933212","https://openalex.org/W2153228625","https://openalex.org/W2162166182","https://openalex.org/W2171268876","https://openalex.org/W2390509206","https://openalex.org/W3149078497","https://openalex.org/W4244381167","https://openalex.org/W4254252669"],"related_works":["https://openalex.org/W1662038552","https://openalex.org/W3021568819","https://openalex.org/W2031026366","https://openalex.org/W2717174904","https://openalex.org/W2548545698","https://openalex.org/W1996306926","https://openalex.org/W2092936829","https://openalex.org/W3012895752","https://openalex.org/W3023876411","https://openalex.org/W123152114"],"abstract_inverted_index":{"MD":[0,70,127,157,171,183],"(Molecular":[1],"Dynamics)":[2],"simulation":[3],"is":[4,73],"widely":[5],"used":[6],"for":[7,52,69,81],"biology":[8],"and":[9,12,39,138,159,196],"chemistry":[10],"study":[11],"requires":[13,104],"computing":[14,24],"power":[15,34,41],"several":[16],"orders":[17],"of":[18,66,98,109,116,126,155,163,169],"magnitude":[19],"beyond":[20],"today's":[21],"commonly":[22],"available":[23],"systems.":[25],"While":[26],"the":[27,60,64,93,99,106,110,114,117,153,156,166,181],"heterogeneous":[28,89,130],"multi-core":[29,90,131],"system":[30,91,132],"offers":[31],"substantial":[32],"computation":[33],"with":[35],"both":[36,192],"lower":[37,40],"cost":[38,162],"consumption,":[42],"its":[43],"unconventional":[44],"hardware":[45],"architecture":[46,178],"poses":[47],"significant":[48],"challenges":[49],"to":[50,56,63,75,83,112,175],"programmers":[51],"enabling":[53],"existing":[54],"applications":[55,158],"run":[57],"efficiently":[58],"on":[59,88,129,186],"system.":[61],"Due":[62],"complexity":[65],"applications,":[67,71],"especially":[68],"it":[72],"difficult":[74],"reorganize":[76],"a":[77,119],"new":[78],"parallel":[79,107,142],"schema":[80,108],"application":[82,94,111],"exploit":[84],"task":[85,124],"level":[86],"parallelism":[87,125],"during":[92],"porting":[95,101,120,170,189],"process.":[96],"Instead":[97],"common":[100],"method":[102,121,190],"that":[103,180],"reorganizing":[105],"accelerate":[113],"hotspots":[115],"computation,":[118],"which":[122],"exploits":[123],"software":[128,172,184],"by":[133],"substituting":[134],"system-level":[135],"communication":[136],"library":[137],"remaining":[139],"application's":[140],"original":[141],"decomposition":[143],"strategy":[144],"unchanged":[145],"was":[146],"proposed":[147,188],"in":[148],"this":[149],"paper.":[150],"Besides":[151],"preserving":[152],"integrity":[154],"avoiding":[160],"additional":[161],"code":[164],"modification,":[165],"experimental":[167],"result":[168],"named":[173],"Moldy":[174],"IBM":[176],"CBE":[177],"shows":[179],"ported":[182],"based":[185],"our":[187],"obtains":[191],"higher":[193,197],"speedup":[194],"ratio":[195],"performance.":[198]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
