{"id":"https://openalex.org/W2029989098","doi":"https://doi.org/10.1109/bicta.2010.5645095","title":"MetageGMRC: A web server for genome-scale metabolic reconstruction and comparison of metagenomes","display_name":"MetageGMRC: A web server for genome-scale metabolic reconstruction and comparison of metagenomes","publication_year":2010,"publication_date":"2010-09-01","ids":{"openalex":"https://openalex.org/W2029989098","doi":"https://doi.org/10.1109/bicta.2010.5645095","mag":"2029989098"},"language":"en","primary_location":{"id":"doi:10.1109/bicta.2010.5645095","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bicta.2010.5645095","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100677600","display_name":"Zhiqiang Liu","orcid":"https://orcid.org/0000-0002-8150-8716"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Liu","raw_affiliation_strings":["Department of Computer Science and Technology, University of Science and Technology, Hefei, China","Department of Computer Sci. and Tech., University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, University of Science and Technology, Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Department of Computer Sci. and Tech., University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101802065","display_name":"Haoran Zheng","orcid":"https://orcid.org/0000-0001-7442-6299"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoran Zheng","raw_affiliation_strings":["Department of Computer Science and Technology, University of Science and Technology, Hefei, China","Department of Systems Biology, University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, University of Science and Technology, Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Department of Systems Biology, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076144487","display_name":"Deguo Xia","orcid":"https://orcid.org/0000-0003-3366-2230"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Deguo Xia","raw_affiliation_strings":["Department of Computer Science and Technology, University of Science and Technology, Hefei, China","Department of Computer Sci. and Tech., University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, University of Science and Technology, Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Department of Computer Sci. and Tech., University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013446276","display_name":"Guisheng Li","orcid":"https://orcid.org/0000-0002-4522-8936"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guisheng Li","raw_affiliation_strings":["Department of Computer Science and Technology, University of Science and Technology, Hefei, China","Department of Computer Sci. and Tech., University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, University of Science and Technology, Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Department of Computer Sci. and Tech., University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I126520041"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13191801,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":null,"first_page":"1155","last_page":"1158"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8266489505767822},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.7961223125457764},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6601304411888123},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.620841383934021},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5826617479324341},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.44484737515449524},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3437396287918091},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3269695043563843},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2573246955871582},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.190837562084198},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11997911334037781}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8266489505767822},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.7961223125457764},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6601304411888123},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.620841383934021},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5826617479324341},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.44484737515449524},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3437396287918091},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3269695043563843},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2573246955871582},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.190837562084198},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11997911334037781},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bicta.2010.5645095","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bicta.2010.5645095","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5799999833106995,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1969522526","https://openalex.org/W1989348205","https://openalex.org/W2013753932","https://openalex.org/W2020302957","https://openalex.org/W2023829651","https://openalex.org/W2057603597","https://openalex.org/W2077631777","https://openalex.org/W2092899907","https://openalex.org/W2107597310","https://openalex.org/W2114034054","https://openalex.org/W2115026474","https://openalex.org/W2133319394","https://openalex.org/W2142237411","https://openalex.org/W2144000913","https://openalex.org/W2148474327","https://openalex.org/W2160533924","https://openalex.org/W2161062388","https://openalex.org/W2165899056","https://openalex.org/W2167062509","https://openalex.org/W4231551535","https://openalex.org/W4298203020","https://openalex.org/W4298226842"],"related_works":["https://openalex.org/W2626999804","https://openalex.org/W4250004941","https://openalex.org/W1961707331","https://openalex.org/W2736202444","https://openalex.org/W2063475537","https://openalex.org/W2341681417","https://openalex.org/W2049015391","https://openalex.org/W2137014442","https://openalex.org/W1533158771","https://openalex.org/W2012938657"],"abstract_inverted_index":{"More":[0],"and":[1,12,33,36,55,112,143],"more":[2,35,37],"environmental":[3],"microbial":[4,62,86,141],"communities,":[5],"also":[6],"known":[7],"as":[8,109],"metagenomes,":[9],"are":[10],"sequenced":[11],"analysed":[13],"in":[14,61],"the":[15,20,52,57,65,96,105,114,145,158],"past":[16],"few":[17],"years.":[18],"Improving":[19],"understanding":[21],"of":[22,45,67,85,98,107,133,140,149],"metagenomic":[23,71],"metabolism":[24],"based":[25,50,94],"on":[26,51,95,118],"metabolic":[27,43,48,59,72,82,91,101,115,126,134,146],"reconstruction,":[28],"has":[29],"wide":[30],"potential":[31],"applications":[32],"attracts":[34],"attentions.":[38],"The":[39],"current":[40],"approach":[41],"for":[42,70,81],"reconstruction":[44],"metagenomes":[46],"predicts":[47],"pathway":[49,127],"available":[53,68,99],"dataset":[54],"excludes":[56],"novel":[58],"function":[60],"communities.":[63,87],"Considering":[64],"weakness":[66],"approaches":[69],"reconstrucion,":[73],"a":[74],"web":[75],"server":[76,123],"called":[77],"MetageGMRC":[78,88,160],"was":[79],"developed":[80],"reaction":[83,92,116,135,147],"network":[84,93,117,148],"can":[89,121,153],"reconstruct":[90,144],"integration":[97],"general":[100],"databases.":[102],"It":[103],"accepts":[104],"annotation":[106],"metagenome":[108],"input":[110],"data":[111,156],"outputs":[113],"which":[119],"scientists":[120],"perform":[122],"applications.":[124],"Novel":[125],"may":[128],"be":[129],"discovered":[130],"during":[131],"analyse":[132],"network.":[136],"Finally,we":[137],"download":[138],"annotations":[139],"communities":[142],"them":[150],"respectively,":[151],"researchers":[152],"acquire":[154],"these":[155],"from":[157],"server.":[159],"is":[161],"freely":[162],"accessible":[163],"at":[164],"http://bioinfo.ustc.edu.cn/softwares/metageGMRC/.":[165]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
