{"id":"https://openalex.org/W2092043944","doi":"https://doi.org/10.1109/bibmw.2012.6470379","title":"Using expression data to help pathway curation","display_name":"Using expression data to help pathway curation","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2092043944","doi":"https://doi.org/10.1109/bibmw.2012.6470379","mag":"2092043944"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2012.6470379","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470379","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053733472","display_name":"Keith Decker","orcid":"https://orcid.org/0000-0003-2707-5769"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keith Decker","raw_affiliation_strings":["Dept. of Computer & Information Sciences, University of Delaware, Newark, DE","Department of Computer and Information Sciences, University of Delaware, Newark, DE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer & Information Sciences, University of Delaware, Newark, DE","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063699866","display_name":"Preeti Anday","orcid":null},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Preeti Anday","raw_affiliation_strings":["Dept. of Computer & Information Sciences, University of Delaware, Newark, DE","Department of Computer and Information Sciences, University of Delaware, Newark, DE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer & Information Sciences, University of Delaware, Newark, DE","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101475441","display_name":"Liang Sun","orcid":"https://orcid.org/0000-0003-1634-4716"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liang Sun","raw_affiliation_strings":["Dept. of Animal & Food Sciences, University of Delaware, Newark, DE","Department of Animal and Food Sciences University of Delaware Newark DE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Animal & Food Sciences, University of Delaware, Newark, DE","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Animal and Food Sciences University of Delaware Newark DE","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004246605","display_name":"Carl J. Schmidt","orcid":"https://orcid.org/0000-0002-8386-4781"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carl Schmidt","raw_affiliation_strings":["Dept. of Animal & Food Sciences, University of Delaware, Newark, DE","Department of Animal and Food Sciences University of Delaware Newark DE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Animal & Food Sciences, University of Delaware, Newark, DE","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Animal and Food Sciences University of Delaware Newark DE","institution_ids":["https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I86501945"],"apc_list":null,"apc_paid":null,"fwci":0.1344,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.53169933,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"535","last_page":"539"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.7574703693389893},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6972754597663879},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.6702007055282593},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6635873913764954},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4676157236099243},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4142827093601227},{"id":"https://openalex.org/keywords/data-modeling","display_name":"Data modeling","score":0.41338881850242615},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33240437507629395},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2842600345611572},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.15436527132987976},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07646992802619934}],"concepts":[{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.7574703693389893},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6972754597663879},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.6702007055282593},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6635873913764954},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4676157236099243},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4142827093601227},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.41338881850242615},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33240437507629395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2842600345611572},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.15436527132987976},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07646992802619934},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2012.6470379","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470379","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.7300000190734863,"display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1565330601","https://openalex.org/W1577783107","https://openalex.org/W1965822196","https://openalex.org/W1966822396","https://openalex.org/W1969709265","https://openalex.org/W2015191210","https://openalex.org/W2028133290","https://openalex.org/W2061231608","https://openalex.org/W2071960494","https://openalex.org/W2103017472","https://openalex.org/W2104803510","https://openalex.org/W2125179362","https://openalex.org/W2135415614","https://openalex.org/W2183013478","https://openalex.org/W6641561548","https://openalex.org/W6686283126"],"related_works":["https://openalex.org/W2701062589","https://openalex.org/W4308914582","https://openalex.org/W4388126069","https://openalex.org/W2567393658","https://openalex.org/W4306317641","https://openalex.org/W1488337274","https://openalex.org/W4287611188","https://openalex.org/W2216178707","https://openalex.org/W3095602079","https://openalex.org/W2889043750"],"abstract_inverted_index":{"Pathway":[0],"models":[1],"for":[2,15,38],"organisms":[3,9],"beyond":[4],"the":[5,81,84],"most":[6],"popular":[7],"model":[8],"are":[10],"often":[11],"notoriously":[12],"incomplete,":[13],"even":[14],"commercially":[16],"important":[17],"species":[18],"such":[19],"as":[20,92],"gallus":[21],"gallus.":[22],"This":[23],"can":[24,74],"make":[25],"experimental":[26],"expression":[27,51,85],"data":[28,86],"hard":[29],"to":[30,48,62,78],"interpret.":[31],"The":[32],"paper":[33],"describes":[34],"ESCAPE":[35],"[Experimental":[36],"System":[37],"Curation":[39],"Assistance":[40],"of":[41,71,83],"Pathways":[42],"via":[43],"Espression":[44],"data],":[45],"under":[46],"development":[47],"use":[49],"available":[50],"data,":[52],"along":[53],"with":[54],"existing":[55],"orthology":[56],"mappings":[57],"and":[58],"curated":[59,89],"machine-interpretable":[60],"pathways,":[61],"assist":[63],"in":[64,80,87],"rapidly":[65],"curating":[66],"new":[67],"species-specific":[68],"pathways.":[69],"Some":[70],"these":[72],"techniques":[73],"also":[75],"be":[76],"extended":[77],"help":[79],"analysis":[82],"a":[88],"pathway":[90],"context":[91],"well.":[93]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
