{"id":"https://openalex.org/W2040568277","doi":"https://doi.org/10.1109/bibmw.2012.6470305","title":"Discovering maximal cohesive subgraphs and patterns from attributed biological networks","display_name":"Discovering maximal cohesive subgraphs and patterns from attributed biological networks","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2040568277","doi":"https://doi.org/10.1109/bibmw.2012.6470305","mag":"2040568277"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2012.6470305","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470305","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091100480","display_name":"Saeed Salem","orcid":"https://orcid.org/0000-0001-6478-4674"},"institutions":[{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saeed Salem","raw_affiliation_strings":["Department of Computer Science, North Dakota State University, Fargo, ND, USA","Department of Computer Science, North Dakota State University, Fargo, North Dakota, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, North Dakota State University, Fargo, ND, USA","institution_ids":["https://openalex.org/I57328836"]},{"raw_affiliation_string":"Department of Computer Science, North Dakota State University, Fargo, North Dakota, USA#TAB#","institution_ids":["https://openalex.org/I57328836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082414524","display_name":"Rami Alroobi","orcid":null},"institutions":[{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rami Alroobi","raw_affiliation_strings":["Department of Computer Science, North Dakota State University, Fargo, ND, USA","Department of Computer Science, North Dakota State University, Fargo, North Dakota, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, North Dakota State University, Fargo, ND, USA","institution_ids":["https://openalex.org/I57328836"]},{"raw_affiliation_string":"Department of Computer Science, North Dakota State University, Fargo, North Dakota, USA#TAB#","institution_ids":["https://openalex.org/I57328836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055089421","display_name":"Syed Sazzad Ahmed","orcid":"https://orcid.org/0000-0001-7476-2604"},"institutions":[{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Syed Ahmed","raw_affiliation_strings":["Department of Computer Science, North Dakota State University, Fargo, ND, USA","Department of Computer Science, North Dakota State University, Fargo, North Dakota, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, North Dakota State University, Fargo, ND, USA","institution_ids":["https://openalex.org/I57328836"]},{"raw_affiliation_string":"Department of Computer Science, North Dakota State University, Fargo, North Dakota, USA#TAB#","institution_ids":["https://openalex.org/I57328836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103842065","display_name":"Mohammad Kabir Hossain","orcid":null},"institutions":[{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad Hossain","raw_affiliation_strings":["Department of Computer Science, North Dakota State University, Fargo, ND, USA","Department of Computer Science, North Dakota State University, Fargo, North Dakota, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, North Dakota State University, Fargo, ND, USA","institution_ids":["https://openalex.org/I57328836"]},{"raw_affiliation_string":"Department of Computer Science, North Dakota State University, Fargo, North Dakota, USA#TAB#","institution_ids":["https://openalex.org/I57328836"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1344,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.52175351,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"1","issue":null,"first_page":"203","last_page":"210"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.7473844885826111},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6381024122238159},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.631202757358551},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5715956687927246},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5469971299171448},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47531968355178833},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.46582290530204773},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.455064058303833},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4516720473766327},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.42840713262557983},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.41866442561149597},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.40182122588157654},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.39438384771347046},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32436853647232056},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27885937690734863},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2097809612751007},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16282051801681519},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1440333127975464},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08915320038795471}],"concepts":[{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.7473844885826111},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6381024122238159},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.631202757358551},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5715956687927246},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5469971299171448},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47531968355178833},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.46582290530204773},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.455064058303833},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4516720473766327},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.42840713262557983},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.41866442561149597},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.40182122588157654},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.39438384771347046},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32436853647232056},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27885937690734863},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2097809612751007},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16282051801681519},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1440333127975464},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08915320038795471},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2012.6470305","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470305","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W67958692","https://openalex.org/W193575463","https://openalex.org/W1876024155","https://openalex.org/W1995089961","https://openalex.org/W2002850151","https://openalex.org/W2004975621","https://openalex.org/W2007843607","https://openalex.org/W2054471412","https://openalex.org/W2056646133","https://openalex.org/W2059736685","https://openalex.org/W2082202339","https://openalex.org/W2107067224","https://openalex.org/W2112811019","https://openalex.org/W2136850043","https://openalex.org/W2139703939","https://openalex.org/W2144317357","https://openalex.org/W2154947819","https://openalex.org/W2156070536","https://openalex.org/W2158246396","https://openalex.org/W2164683872","https://openalex.org/W2168708357","https://openalex.org/W2169905457","https://openalex.org/W4212845555","https://openalex.org/W4246219036","https://openalex.org/W6607821713","https://openalex.org/W6649153135","https://openalex.org/W6681333496"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W2158714033","https://openalex.org/W4385510321","https://openalex.org/W2101315668","https://openalex.org/W15348386","https://openalex.org/W4386628104","https://openalex.org/W2307569040","https://openalex.org/W78967844","https://openalex.org/W1562139464"],"abstract_inverted_index":{"With":[0],"the":[1,32,68,81,85,91,111,114,119,122,135,153,160],"availability":[2],"of":[3,6,31,44,53,70,84,93,101,113,121],"vast":[4],"amounts":[5],"protein-protein,":[7],"protein-DNA":[8],"interactions,":[9],"and":[10,107],"genome-wide":[11],"mRNA":[12],"expression":[13],"data":[14,56,59],"for":[15,35],"several":[16,148],"organisms,":[17],"identifying":[18],"biological":[19,127],"complexes":[20],"has":[21,48],"emerged":[22],"as":[23],"a":[24],"major":[25],"task":[26],"in":[27],"systems":[28],"biology.":[29],"Most":[30],"existing":[33],"approaches":[34],"complex":[36],"identification":[37],"have":[38],"focused":[39],"on":[40,105,152,157],"utilizing":[41],"one":[42],"source":[43],"data.":[45],"Recent":[46],"research":[47],"shown":[49],"that":[50,75,134],"systematic":[51],"integration":[52],"gene":[54,82],"profile":[55],"with":[57,125],"interaction":[58],"yields":[60],"significant":[61],"patterns.":[62],"In":[63],"this":[64],"paper,":[65],"we":[66,89],"introduce":[67,90],"problem":[69,92],"mining":[71],"maximal":[72,95],"cohesive":[73,96],"subnetworks":[74,124,137],"satisfy":[76],"user-defined":[77,161],"constraints":[78],"defined":[79],"over":[80],"profiles":[83],"reported":[86],"subnetworks.":[87],"Moreover,":[88,129],"finding":[94],"patterns":[97],"which":[98],"are":[99,138],"sets":[100],"coehsive":[102],"genes.":[103],"Experiments":[104],"Yeast":[106],"Human":[108,154],"datasets":[109],"show":[110,133],"effectiveness":[112],"proposed":[115,142],"approach":[116],"by":[117],"assessing":[118],"overlap":[120],"discovered":[123,136],"known":[126],"complexes.":[128],"GO":[130],"enrichment":[131],"analysis":[132],"biologically":[139],"significant.":[140],"The":[141],"algorithm":[143],"takes":[144],"only":[145],"seconds":[146],"to":[147,150],"minutes":[149],"run":[151],"dataset":[155],"depending":[156],"how":[158],"stringent":[159],"constraint":[162],"is.":[163]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
