{"id":"https://openalex.org/W2014595039","doi":"https://doi.org/10.1109/bibmw.2012.6470295","title":"Chemogenomic approach to comprehensive predictions of ligand-target interactions: A comparative study","display_name":"Chemogenomic approach to comprehensive predictions of ligand-target interactions: A comparative study","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2014595039","doi":"https://doi.org/10.1109/bibmw.2012.6470295","mag":"2014595039"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2012.6470295","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470295","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089294965","display_name":"J.B. Brown","orcid":null},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I25998863","display_name":"Kyoto Pharmaceutical University","ror":"https://ror.org/01ytgve10","country_code":"JP","type":"education","lineage":["https://openalex.org/I25998863"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"J. B. Brown","raw_affiliation_strings":["Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan","Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University Kyoto Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I25998863"]},{"raw_affiliation_string":"Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University Kyoto Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I25998863"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063578026","display_name":"Satoshi Niijima","orcid":null},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I25998863","display_name":"Kyoto Pharmaceutical University","ror":"https://ror.org/01ytgve10","country_code":"JP","type":"education","lineage":["https://openalex.org/I25998863"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Satoshi Niijima","raw_affiliation_strings":["Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan","Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University Kyoto Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I25998863"]},{"raw_affiliation_string":"Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University Kyoto Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I25998863"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040002011","display_name":"Akira Shiraishi","orcid":"https://orcid.org/0000-0003-3456-3074"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I25998863","display_name":"Kyoto Pharmaceutical University","ror":"https://ror.org/01ytgve10","country_code":"JP","type":"education","lineage":["https://openalex.org/I25998863"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akira Shiraishi","raw_affiliation_strings":["Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan","Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University Kyoto Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I25998863"]},{"raw_affiliation_string":"Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University Kyoto Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I25998863"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091525968","display_name":"Masahiko Nakatsui","orcid":"https://orcid.org/0000-0001-6531-5220"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I25998863","display_name":"Kyoto Pharmaceutical University","ror":"https://ror.org/01ytgve10","country_code":"JP","type":"education","lineage":["https://openalex.org/I25998863"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masahiko Nakatsui","raw_affiliation_strings":["Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan","Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University Kyoto Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I25998863"]},{"raw_affiliation_string":"Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University Kyoto Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I25998863"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046211758","display_name":"Yasushi Okuno","orcid":"https://orcid.org/0000-0003-3596-4208"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I25998863","display_name":"Kyoto Pharmaceutical University","ror":"https://ror.org/01ytgve10","country_code":"JP","type":"education","lineage":["https://openalex.org/I25998863"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yasushi Okuno","raw_affiliation_strings":["Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan","Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University Kyoto Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I25998863"]},{"raw_affiliation_string":"Department of Systems Biosciences for Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyoto University Kyoto Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I25998863"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2","issue":null,"first_page":"136","last_page":"142"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9782999753952026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.6901348233222961},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6252104043960571},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4906724691390991},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.4896450638771057},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4879607558250427},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.46560603380203247},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.46286165714263916},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.46040356159210205},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3608708381652832},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3445349931716919},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.209439218044281},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19194447994232178},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07933571934700012}],"concepts":[{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.6901348233222961},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6252104043960571},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4906724691390991},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.4896450638771057},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4879607558250427},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.46560603380203247},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.46286165714263916},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.46040356159210205},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3608708381652832},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3445349931716919},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.209439218044281},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19194447994232178},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07933571934700012},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2012.6470295","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470295","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320327845","display_name":"Ono Pharmaceutical","ror":"https://ror.org/022jefx64"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1560724230","https://openalex.org/W1612556207","https://openalex.org/W1965577964","https://openalex.org/W1986684432","https://openalex.org/W1988037271","https://openalex.org/W1988259820","https://openalex.org/W2001515828","https://openalex.org/W2004957946","https://openalex.org/W2017891440","https://openalex.org/W2031966640","https://openalex.org/W2033591223","https://openalex.org/W2049454409","https://openalex.org/W2060851522","https://openalex.org/W2081301924","https://openalex.org/W2100672820","https://openalex.org/W2104950117","https://openalex.org/W2121612327","https://openalex.org/W2121950477","https://openalex.org/W2130253098","https://openalex.org/W2137507165","https://openalex.org/W2146382443","https://openalex.org/W2148972970","https://openalex.org/W2152800101","https://openalex.org/W2158698691","https://openalex.org/W2166410137","https://openalex.org/W2170960297","https://openalex.org/W2200017991","https://openalex.org/W2261054240","https://openalex.org/W2317928565","https://openalex.org/W3144619878","https://openalex.org/W4213151958","https://openalex.org/W4237511345","https://openalex.org/W6636658889"],"related_works":["https://openalex.org/W2973074952","https://openalex.org/W4283395020","https://openalex.org/W4320732452","https://openalex.org/W135095951","https://openalex.org/W4286980196","https://openalex.org/W4385588199","https://openalex.org/W3199987505","https://openalex.org/W4385760073","https://openalex.org/W2600435468","https://openalex.org/W2324927567"],"abstract_inverted_index":{"Chemogenomics":[0],"has":[1,36,66],"emerged":[2],"as":[3],"an":[4],"interdisciplinary":[5],"field":[6],"that":[7],"aims":[8],"to":[9,26,51],"ultimately":[10],"identify":[11],"all":[12,16],"possible":[13],"ligands":[14,33],"of":[15,31,41,75,85,97],"target":[17,90,114],"families":[18],"in":[19,56],"a":[20,53,61],"systematic":[21],"manner.":[22],"An":[23],"ever-increasing":[24],"need":[25],"explore":[27,72],"the":[28,39,49,73,82,104,109,113],"vast":[29],"space":[30],"both":[32],"and":[34,92,100,106],"targets":[35],"recently":[37],"triggered":[38],"development":[40],"novel":[42],"computational":[43],"techniques":[44],"for":[45],"chemogenomics,":[46],"which":[47],"have":[48],"potential":[50],"play":[52],"crucial":[54],"role":[55],"drug":[57],"discovery.":[58],"Among":[59],"others,":[60],"kernel-based":[62],"machine":[63],"learning":[64],"approach":[65],"attracted":[67],"increasing":[68],"attention.":[69],"Here,":[70],"we":[71],"applicability":[74],"several":[76],"ligand-target":[77,86],"kernels":[78,99,102],"by":[79],"extensively":[80],"evaluating":[81],"prediction":[83],"performance":[84,105,110],"interactions":[87],"on":[88],"five":[89],"families,":[91],"reveal":[93],"how":[94,108],"different":[95],"combinations":[96],"ligand":[98],"protein":[101],"affect":[103],"also":[107],"varies":[111],"between":[112],"families.":[115]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
