{"id":"https://openalex.org/W1988704113","doi":"https://doi.org/10.1109/bibmw.2012.6470219","title":"Identification of transposable elements of the giant panda (Ailuropoda melanoleuca) genome","display_name":"Identification of transposable elements of the giant panda (Ailuropoda melanoleuca) genome","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W1988704113","doi":"https://doi.org/10.1109/bibmw.2012.6470219","mag":"1988704113"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2012.6470219","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470219","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085827834","display_name":"Avindra Fernando","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Avindra Fernando","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Kansas, USA","Department of Electrical Engineering and Computer Science, University of Kansas"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Kansas","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107809276","display_name":"Jun Huan","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jun Huan","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Kansas, USA","Department of Electrical Engineering and Computer Science, University of Kansas"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Kansas","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023270559","display_name":"Justin P. Blumenstiel","orcid":"https://orcid.org/0000-0001-6221-9292"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin P. Blumenstiel","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, University of Kansas, USA","Department of Ecology and Evolutionary Biology University of Kansas"],"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology University of Kansas","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058783866","display_name":"Jin Lin","orcid":"https://orcid.org/0000-0002-0310-6463"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin Lin","raw_affiliation_strings":["Key Laboratory of Conservation Biology on Endangered Wildlife, College of Life Sciences, Sichuan University, China","Key Laboratory of Conservation Biology on Endangered Wildlife, College of Life Sciences, Sichuan University"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Conservation Biology on Endangered Wildlife, College of Life Sciences, Sichuan University, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Key Laboratory of Conservation Biology on Endangered Wildlife, College of Life Sciences, Sichuan University","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100736156","display_name":"Xuewen Chen","orcid":"https://orcid.org/0000-0002-2794-3987"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xue-wen Chen","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Kansas, USA","Department of Electrical Engineering and Computer Science, University of Kansas"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Kansas","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052233895","display_name":"Bo Luo","orcid":"https://orcid.org/0000-0001-8196-2436"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bo Luo","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Kansas, USA","Department of Electrical Engineering and Computer Science, University of Kansas"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Kansas","institution_ids":["https://openalex.org/I146416000"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5085827834"],"corresponding_institution_ids":["https://openalex.org/I146416000"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09927877,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"17","issue":null,"first_page":"674","last_page":"681"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ailuropoda-melanoleuca","display_name":"Ailuropoda melanoleuca","score":0.9796340465545654},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.8193151950836182},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7134095430374146},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5923170447349548},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.52692711353302},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4987795352935791},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.41824156045913696},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.41055065393447876},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37194764614105225},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2959841191768646},{"id":"https://openalex.org/keywords/zoology","display_name":"Zoology","score":0.12619814276695251},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.10574430227279663},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.09137183427810669},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0872984230518341}],"concepts":[{"id":"https://openalex.org/C2908694543","wikidata":"https://www.wikidata.org/wiki/Q33602","display_name":"Ailuropoda melanoleuca","level":2,"score":0.9796340465545654},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.8193151950836182},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7134095430374146},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5923170447349548},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.52692711353302},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4987795352935791},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.41824156045913696},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.41055065393447876},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37194764614105225},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2959841191768646},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.12619814276695251},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.10574430227279663},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.09137183427810669},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0872984230518341},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2012.6470219","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470219","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.7300000190734863,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1651738511","https://openalex.org/W1967352352","https://openalex.org/W1978375191","https://openalex.org/W2065996086","https://openalex.org/W2070328439","https://openalex.org/W2082081973","https://openalex.org/W2098353360","https://openalex.org/W2114611642","https://openalex.org/W2120762351","https://openalex.org/W2124985265","https://openalex.org/W2129581281","https://openalex.org/W2144268209","https://openalex.org/W2159946869","https://openalex.org/W2171976338","https://openalex.org/W3149786195"],"related_works":["https://openalex.org/W3155625410","https://openalex.org/W4236888428","https://openalex.org/W3134189156","https://openalex.org/W2053969879","https://openalex.org/W2082641564","https://openalex.org/W2107333779","https://openalex.org/W3108190435","https://openalex.org/W2790772971","https://openalex.org/W1964419640","https://openalex.org/W1906262170"],"abstract_inverted_index":{"Transposable":[0],"elements":[1,36,63],"are":[2,31],"very":[3],"common":[4],"in":[5,12,64],"genomes":[6,25],"and":[7,9,22,45,78,87],"play":[8],"important":[10,41],"role":[11],"evolution.":[13],"Recently,":[14],"using":[15],"the":[16,28,43,60,65],"next":[17],"generation":[18],"sequencing":[19],"technologies":[20],"more":[21,23],"non-traditional":[24],"such":[26,38],"as":[27],"giant":[29,66,89],"panda":[30,67,90],"being":[32],"sequenced.":[33],"Identifying":[34],"transposable":[35,91],"from":[37],"species":[39],"is":[40],"for":[42],"population":[44],"conservation":[46],"study":[47,57],"of":[48],"those":[49],"species.":[50],"In":[51],"this":[52],"paper":[53],"we":[54],"conducted":[55],"a":[56,79],"to":[58,84],"identify":[59],"genomie":[61],"repetitive":[62,74],"genome":[68],"(Ailuropoda":[69],"melanoleuca).":[70],"We":[71],"used":[72],"two":[73],"sequence":[75],"identification":[76],"methods":[77],"short":[80],"read":[81],"mapping":[82],"method":[83],"identify,":[85],"compare":[86],"annotate":[88],"elements.":[92]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}