{"id":"https://openalex.org/W1971498508","doi":"https://doi.org/10.1109/bibmw.2012.6470215","title":"Managing data provenance in genome project workflows","display_name":"Managing data provenance in genome project workflows","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W1971498508","doi":"https://doi.org/10.1109/bibmw.2012.6470215","mag":"1971498508"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2012.6470215","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470215","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085922586","display_name":"Renato De Paula","orcid":"https://orcid.org/0000-0002-5835-5918"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Renato de Paula","raw_affiliation_strings":["Computer Science Department, University of Bras\u00edlia, Brasilia, Brazil","Computer Science Department, University of Brasilia (UnB), Brasilia, Brazil#TAB#"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Bras\u00edlia, Brasilia, Brazil","institution_ids":["https://openalex.org/I150729083"]},{"raw_affiliation_string":"Computer Science Department, University of Brasilia (UnB), Brasilia, Brazil#TAB#","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054089208","display_name":"Maristela Holanda","orcid":"https://orcid.org/0000-0002-0883-2579"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maristela T. Holanda","raw_affiliation_strings":["Computer Science Department, University of Bras\u00edlia, Brasilia, Brazil","Computer Science Department, University of Brasilia (UnB), Brasilia, Brazil#TAB#"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Bras\u00edlia, Brasilia, Brazil","institution_ids":["https://openalex.org/I150729083"]},{"raw_affiliation_string":"Computer Science Department, University of Brasilia (UnB), Brasilia, Brazil#TAB#","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071276748","display_name":"Maria Em\u00edlia M. T. Walter","orcid":"https://orcid.org/0000-0001-6822-931X"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maria Emilia M. T. Walter","raw_affiliation_strings":["Computer Science Department, University of Bras\u00edlia, Brasilia, Brazil","Computer Science Department, University of Brasilia (UnB), Brasilia, Brazil#TAB#"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Bras\u00edlia, Brasilia, Brazil","institution_ids":["https://openalex.org/I150729083"]},{"raw_affiliation_string":"Computer Science Department, University of Brasilia (UnB), Brasilia, Brazil#TAB#","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085416987","display_name":"S\u00e9rgio Lifschitz","orcid":"https://orcid.org/0000-0003-3073-3734"},"institutions":[{"id":"https://openalex.org/I2699952","display_name":"Pontifical Catholic University of Rio de Janeiro","ror":"https://ror.org/01dg47b60","country_code":"BR","type":"education","lineage":["https://openalex.org/I2699952"]},{"id":"https://openalex.org/I84470341","display_name":"Catholic University of America","ror":"https://ror.org/047yk3s18","country_code":"US","type":"education","lineage":["https://openalex.org/I84470341"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Sergio Lifschitz","raw_affiliation_strings":["Informatics Department, Pontifical Catholic University, Rio de Janeiro, Brazil","Informatics Department, Pontificial Catholic University (PUC/RJ), Rio de Janeiro, Brazil"],"affiliations":[{"raw_affiliation_string":"Informatics Department, Pontifical Catholic University, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]},{"raw_affiliation_string":"Informatics Department, Pontificial Catholic University (PUC/RJ), Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I84470341"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5085922586"],"corresponding_institution_ids":["https://openalex.org/I150729083"],"apc_list":null,"apc_paid":null,"fwci":2.0825,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.89911381,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"4145","issue":null,"first_page":"654","last_page":"661"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8916323184967041},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7778778076171875},{"id":"https://openalex.org/keywords/provenance","display_name":"Provenance","score":0.6769046783447266},{"id":"https://openalex.org/keywords/plan","display_name":"Plan (archaeology)","score":0.46632105112075806},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.4449564218521118},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.426744282245636},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4049656093120575},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.36141782999038696},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34882277250289917},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1537555456161499}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8916323184967041},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7778778076171875},{"id":"https://openalex.org/C2780049196","wikidata":"https://www.wikidata.org/wiki/Q23582628","display_name":"Provenance","level":2,"score":0.6769046783447266},{"id":"https://openalex.org/C2776505523","wikidata":"https://www.wikidata.org/wiki/Q4785468","display_name":"Plan (archaeology)","level":2,"score":0.46632105112075806},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.4449564218521118},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.426744282245636},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4049656093120575},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.36141782999038696},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34882277250289917},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1537555456161499},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C5900021","wikidata":"https://www.wikidata.org/wiki/Q163082","display_name":"Petrology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2012.6470215","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470215","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W137781046","https://openalex.org/W241117969","https://openalex.org/W262628010","https://openalex.org/W1540609783","https://openalex.org/W1552694902","https://openalex.org/W1564519640","https://openalex.org/W1575999478","https://openalex.org/W1585868236","https://openalex.org/W1785355888","https://openalex.org/W1990521927","https://openalex.org/W2005129098","https://openalex.org/W2031740815","https://openalex.org/W2093896414","https://openalex.org/W2098805832","https://openalex.org/W2107233609","https://openalex.org/W2121211805","https://openalex.org/W2128226234","https://openalex.org/W2132767127","https://openalex.org/W2151397621","https://openalex.org/W2168103533","https://openalex.org/W2482322036","https://openalex.org/W2727986795","https://openalex.org/W4243861478","https://openalex.org/W6605686916","https://openalex.org/W6609709073","https://openalex.org/W6632468445","https://openalex.org/W6633250042","https://openalex.org/W6740936645"],"related_works":["https://openalex.org/W2354627941","https://openalex.org/W2347483153","https://openalex.org/W2353379336","https://openalex.org/W2379683085","https://openalex.org/W2363868702","https://openalex.org/W2374448931","https://openalex.org/W2376723740","https://openalex.org/W2370535391","https://openalex.org/W2370679613","https://openalex.org/W2380057024"],"abstract_inverted_index":{"In":[0,72,92],"this":[1],"article,":[2],"we":[3,74,98],"propose":[4],"the":[5,8,33,82],"application":[6],"of":[7,29,32,55,84,103],"PROV-DM":[9],"model":[10,24,88],"to":[11,18,80,94,109],"manage":[12],"data":[13,87],"provenance":[14,23,78,86],"for":[15],"workflows":[16],"designed":[17],"support":[19],"genome":[20,90],"projects.":[21,91],"This":[22,49],"aims":[25,108],"at":[26],"storing":[27],"details":[28,54],"each":[30],"execution":[31],"workflow,":[34],"which":[35],"include":[36],"raw":[37],"and":[38,43,46,66,112,119],"produced":[39,123],"data,":[40],"computational":[41],"tools":[42],"versions,":[44],"parameters,":[45],"so":[47],"on.":[48],"way,":[50],"biologists":[51],"can":[52],"review":[53],"a":[56,77,85,100],"particular":[57],"workflow":[58],"execution,":[59],"compare":[60,113],"information":[61],"generated":[62],"among":[63],"different":[64],"executions,":[65],"plan":[67],"new":[68],"ones":[69],"more":[70],"efficiently.":[71],"addition,":[73],"have":[75],"created":[76],"simulator":[79],"facilitate":[81],"inclusion":[83],"in":[89],"order":[93],"validate":[95],"our":[96],"proposal,":[97],"discuss":[99],"case":[101],"study":[102],"an":[104],"RNA-Seq":[105],"project":[106],"that":[107],"identify,":[110],"measure":[111],"RNA":[114,121],"expression":[115],"levels":[116],"across":[117],"liver":[118],"kidney":[120],"samples":[122],"by":[124],"high-throughput":[125],"automatic":[126],"sequencers.":[127]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
