{"id":"https://openalex.org/W1991220686","doi":"https://doi.org/10.1109/bibmw.2012.6470211","title":"A syntactic rule-based method for automatic pathway information extraction from biom&amp;#x00E9;dical literature","display_name":"A syntactic rule-based method for automatic pathway information extraction from biom&amp;#x00E9;dical literature","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W1991220686","doi":"https://doi.org/10.1109/bibmw.2012.6470211","mag":"1991220686"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2012.6470211","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470211","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100390782","display_name":"Yanhua Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanhua Wang","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, 116024, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051597671","display_name":"Zhihao Yang","orcid":"https://orcid.org/0000-0001-6186-2024"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihao Yang","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, 116024, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, 116024, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100718350","display_name":"Yanpeng Li","orcid":"https://orcid.org/0000-0003-3365-6092"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanpeng Li","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, 116024, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, 116024, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"8","issue":null,"first_page":"626","last_page":"633"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7590899467468262},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.6293215751647949},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.5802006125450134},{"id":"https://openalex.org/keywords/dependency","display_name":"Dependency (UML)","score":0.576956570148468},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5563581585884094},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5386881828308105},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5319811105728149},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.5316325426101685},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5058609843254089},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47156140208244324},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.29612743854522705}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7590899467468262},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.6293215751647949},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.5802006125450134},{"id":"https://openalex.org/C19768560","wikidata":"https://www.wikidata.org/wiki/Q320727","display_name":"Dependency (UML)","level":2,"score":0.576956570148468},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5563581585884094},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5386881828308105},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5319811105728149},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.5316325426101685},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5058609843254089},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47156140208244324},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29612743854522705},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2012.6470211","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470211","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W2059496902","https://openalex.org/W2070587756","https://openalex.org/W2077566950","https://openalex.org/W2093618552","https://openalex.org/W2097606805","https://openalex.org/W2103316358","https://openalex.org/W2111919446","https://openalex.org/W2114090586","https://openalex.org/W2137881949","https://openalex.org/W2138275182","https://openalex.org/W2140469676","https://openalex.org/W2140601463","https://openalex.org/W2147880316","https://openalex.org/W2155134825","https://openalex.org/W2156362066","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W4294216483","https://openalex.org/W6682082992","https://openalex.org/W6683193699"],"related_works":["https://openalex.org/W2968543375","https://openalex.org/W2098784136","https://openalex.org/W4288558800","https://openalex.org/W2953770453","https://openalex.org/W2888625260","https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416"],"abstract_inverted_index":{"Automatically":[0],"extracting":[1,31,50],"protein":[2],"pathway":[3,32],"information":[4,34],"from":[5,35,52],"the":[6,60],"vast":[7],"amount":[8],"of":[9,62],"published":[10],"literature":[11],"helps":[12],"us":[13],"understand":[14],"diseases":[15],"and":[16,46],"discover":[17],"new":[18],"drug":[19],"targets.":[20],"In":[21],"this":[22],"paper,":[23],"we":[24],"propose":[25],"a":[26],"syntactic":[27,53],"rule-based":[28],"method":[29,39],"for":[30],"relation":[33],"Medline":[36],"abstracts.":[37],"This":[38],"takes":[40],"into":[41],"account":[42],"comprehensive":[43],"dependency":[44],"types":[45],"negative":[47],"connectives":[48],"when":[49],"relations":[51],"analysis":[54],"results.":[55],"The":[56],"benchmarking":[57],"results":[58],"demonstrate":[59],"effectiveness":[61],"our":[63],"method.":[64]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
