{"id":"https://openalex.org/W1992388834","doi":"https://doi.org/10.1109/bibmw.2012.6470210","title":"An efficient dynamic programming algorithm for phosphorylation site assignment of large-scale mass spectrometry data","display_name":"An efficient dynamic programming algorithm for phosphorylation site assignment of large-scale mass spectrometry data","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W1992388834","doi":"https://doi.org/10.1109/bibmw.2012.6470210","mag":"1992388834","pmid":"https://pubmed.ncbi.nlm.nih.gov/23471519"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2012.6470210","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470210","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3588598","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102729196","display_name":"Fahad Saeed","orcid":"https://orcid.org/0000-0002-3410-9552"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Fahad Saeed","raw_affiliation_strings":["Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA","Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA","institution_ids":[]},{"raw_affiliation_string":"Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA#TAB#","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026991644","display_name":"Trairak Pisitkun","orcid":"https://orcid.org/0000-0001-6677-2271"},"institutions":[{"id":"https://openalex.org/I4210106489","display_name":"National Heart Lung and Blood Institute","ror":"https://ror.org/012pb6c26","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210106489"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Trairak Pisitkun","raw_affiliation_strings":["Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA","Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA#TAB#","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006125328","display_name":"Jason D. Hoffert","orcid":null},"institutions":[{"id":"https://openalex.org/I4210106489","display_name":"National Heart Lung and Blood Institute","ror":"https://ror.org/012pb6c26","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210106489"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason D. Hoffert","raw_affiliation_strings":["Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA","Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA#TAB#","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117170216","display_name":"Guanghui Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210106489","display_name":"National Heart Lung and Blood Institute","ror":"https://ror.org/012pb6c26","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210106489"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guanghui Wang","raw_affiliation_strings":["Proteomics Core Facility, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA","Proteomics Core Facility, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA"],"affiliations":[{"raw_affiliation_string":"Proteomics Core Facility, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Proteomics Core Facility, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004066155","display_name":"Marjan Gu\u010dek","orcid":"https://orcid.org/0000-0001-7890-2520"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210106489","display_name":"National Heart Lung and Blood Institute","ror":"https://ror.org/012pb6c26","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210106489"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marjan Gucek","raw_affiliation_strings":["Proteomics Core Facility, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA","Proteomics Core Facility, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA"],"affiliations":[{"raw_affiliation_string":"Proteomics Core Facility, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Proteomics Core Facility, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029048638","display_name":"Mark A. Knepper","orcid":"https://orcid.org/0000-0002-2276-8091"},"institutions":[{"id":"https://openalex.org/I4210106489","display_name":"National Heart Lung and Blood Institute","ror":"https://ror.org/012pb6c26","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210106489"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A. Knepper","raw_affiliation_strings":["Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA","Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Epithelial Systems Biology Laboratory, National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, Maryland USA#TAB#","institution_ids":["https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5102729196"],"corresponding_institution_ids":["https://openalex.org/I1299303238"],"apc_list":null,"apc_paid":null,"fwci":1.7767,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.82448205,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"10","issue":null,"first_page":"618","last_page":"625"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phosphoproteomics","display_name":"Phosphoproteomics","score":0.7930325269699097},{"id":"https://openalex.org/keywords/phosphopeptide","display_name":"Phosphopeptide","score":0.6611607670783997},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.660410463809967},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5769028067588806},{"id":"https://openalex.org/keywords/stable-isotope-labeling-by-amino-acids-in-cell-culture","display_name":"Stable isotope labeling by amino acids in cell culture","score":0.5682876110076904},{"id":"https://openalex.org/keywords/tandem-mass-spectrometry","display_name":"Tandem mass spectrometry","score":0.5531604290008545},{"id":"https://openalex.org/keywords/fragmentation","display_name":"Fragmentation (computing)","score":0.5090944170951843},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.4075544476509094},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2647155523300171},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"Protein phosphorylation","score":0.260598361492157},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.2411407232284546},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.23449531197547913}],"concepts":[{"id":"https://openalex.org/C6675166","wikidata":"https://www.wikidata.org/wiki/Q7187538","display_name":"Phosphoproteomics","level":5,"score":0.7930325269699097},{"id":"https://openalex.org/C2779933727","wikidata":"https://www.wikidata.org/wiki/Q7187535","display_name":"Phosphopeptide","level":3,"score":0.6611607670783997},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.660410463809967},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5769028067588806},{"id":"https://openalex.org/C34905852","wikidata":"https://www.wikidata.org/wiki/Q3943646","display_name":"Stable isotope labeling by amino acids in cell culture","level":4,"score":0.5682876110076904},{"id":"https://openalex.org/C31827203","wikidata":"https://www.wikidata.org/wiki/Q874296","display_name":"Tandem mass spectrometry","level":3,"score":0.5531604290008545},{"id":"https://openalex.org/C191015642","wikidata":"https://www.wikidata.org/wiki/Q1132459","display_name":"Fragmentation (computing)","level":2,"score":0.5090944170951843},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.4075544476509094},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2647155523300171},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.260598361492157},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.2411407232284546},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.23449531197547913},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/bibmw.2012.6470210","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470210","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"},{"id":"pmid:23471519","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23471519","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE International Conference on Bioinformatics and Biomedicine","raw_type":null},{"id":"pmh:oai:europepmc.org:2588784","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3588598","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3588598","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3588598","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings (IEEE Int Conf Bioinformatics Biomed)","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:3588598","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3588598","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings (IEEE Int Conf Bioinformatics Biomed)","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320337433","display_name":"Budget Division","ror":null},{"id":"https://openalex.org/F4320338421","display_name":"NHLBI Division of Intramural Research","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1523863425","https://openalex.org/W1965807926","https://openalex.org/W1980297970","https://openalex.org/W1980793852","https://openalex.org/W1984566266","https://openalex.org/W1993450321","https://openalex.org/W1996904583","https://openalex.org/W2004182894","https://openalex.org/W2005126769","https://openalex.org/W2013255353","https://openalex.org/W2015039564","https://openalex.org/W2018375934","https://openalex.org/W2023655541","https://openalex.org/W2024569607","https://openalex.org/W2025926471","https://openalex.org/W2026465178","https://openalex.org/W2033107146","https://openalex.org/W2034138130","https://openalex.org/W2074506506","https://openalex.org/W2075036506","https://openalex.org/W2079675844","https://openalex.org/W2080752012","https://openalex.org/W2083712661","https://openalex.org/W2101765726","https://openalex.org/W2115509391","https://openalex.org/W2127325419","https://openalex.org/W2128987420","https://openalex.org/W2130852027","https://openalex.org/W2155983059","https://openalex.org/W2167827705","https://openalex.org/W2169068071","https://openalex.org/W2325375737","https://openalex.org/W3102187655","https://openalex.org/W6631200598"],"related_works":["https://openalex.org/W2063527102","https://openalex.org/W2055152749","https://openalex.org/W1999971214","https://openalex.org/W2166872160","https://openalex.org/W1975234428","https://openalex.org/W2047196168","https://openalex.org/W2792087494","https://openalex.org/W2057656847","https://openalex.org/W4309082212","https://openalex.org/W1972688939"],"abstract_inverted_index":{"Phosphorylation":[0],"site":[1,51,72],"assignment":[2,21],"of":[3,18,22,30,88,106,114,121,134,151,180],"large-scale":[4],"data":[5,13,32,45,132],"from":[6],"high":[7,178],"throughput":[8],"tandem":[9],"mass":[10,43],"spectrometry":[11,44],"(LC-MS/MS)":[12],"is":[14,25,101,112,127,156,169,184,203],"an":[15,198],"important":[16,26],"aspect":[17],"phosphoproteomics.":[19],"Correct":[20],"phosphorylated":[23],"residue(s)":[24],"for":[27,42,49,70,208],"functional":[28],"interpretation":[29],"the":[31,81,86,104,115,122,142,152],"within":[33],"a":[34,63,107,177],"biological":[35],"context.":[36],"Common":[37],"search":[38],"algorithms":[39,55],"(Sequest":[40],"etc.)":[41],"are":[46,56,92],"not":[47],"designed":[48],"accurate":[50],"assignment;":[52],"thus,":[53],"additional":[54],"needed.":[57],"In":[58],"this":[59],"paper,":[60],"we":[61],"propose":[62],"linear-time":[64],"and":[65,119,148,166,187],"linear-space":[66],"dynamic":[67],"programming":[68],"strategy":[69,144],"phosphorylation":[71,138],"assignment.":[73],"The":[74,125,154,182,200],"algorithm,":[75],"referred":[76],"to":[77,171,190,193],"as":[78,85],"PhosSA,":[79],"optimizes":[80],"objective":[82],"function":[83],"defined":[84],"summation":[87],"peak":[89],"intensities":[90],"that":[91],"associated":[93],"with":[94,136,159,176],"theoretical":[95],"phosphopeptide":[96],"fragmentation":[97,123,143],"ions.":[98],"Quality":[99],"control":[100],"achieved":[102],"through":[103],"use":[105],"post-processing":[108],"criteria":[109],"whose":[110],"value":[111],"indicative":[113],"signal-to-noise":[116],"(S/N)":[117],"properties":[118],"redundancy":[120],"spectra.":[124],"algorithm":[126,155,183,202],"tested":[128],"using":[129],"experimentally":[130],"generated":[131],"sets":[133],"peptides":[135,196],"known":[137],"sites":[139],"while":[140],"varying":[141],"(CID":[145],"or":[146],"HCD)":[147],"molar":[149],"amounts":[150],"peptides.":[153],"also":[157],"compatible":[158],"various":[160],"peptide":[161],"labeling":[162],"strategies":[163],"including":[164],"SILAC":[165],"iTRAQ.":[167],"PhosSA":[168],"shown":[170],"achieve":[172],">":[173],"99%":[174],"accuracy":[175],"degree":[179],"sensitivity.":[181],"extremely":[185],"fast":[186],"scalable":[188],"(able":[189],"process":[191],"up":[192],"0.5":[194],"million":[195],"in":[197],"hour).":[199],"implemented":[201],"freely":[204],"available":[205],"at":[206],"http://helixweb.nih.gov/ESBL/PhosSA/":[207],"academic":[209],"purposes.":[210]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
