{"id":"https://openalex.org/W2165846639","doi":"https://doi.org/10.1109/bibmw.2012.6470197","title":"Spatial index and visualization of protein structure","display_name":"Spatial index and visualization of protein structure","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2165846639","doi":"https://doi.org/10.1109/bibmw.2012.6470197","mag":"2165846639"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2012.6470197","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470197","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051035661","display_name":"Hui Li","orcid":"https://orcid.org/0000-0002-5555-8920"},"institutions":[{"id":"https://openalex.org/I137853757","display_name":"Howard University","ror":"https://ror.org/05gt1vc06","country_code":"US","type":"education","lineage":["https://openalex.org/I137853757"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hui Li","raw_affiliation_strings":["Department of Systems and Computer Science, Howard University, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Department of Systems and Computer Science, Howard University, Washington, DC, USA","institution_ids":["https://openalex.org/I137853757"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115590267","display_name":"Chunmei Liu","orcid":"https://orcid.org/0000-0001-9560-3709"},"institutions":[{"id":"https://openalex.org/I137853757","display_name":"Howard University","ror":"https://ror.org/05gt1vc06","country_code":"US","type":"education","lineage":["https://openalex.org/I137853757"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunmei Liu","raw_affiliation_strings":["Department of Systems and Computer Science, Howard University, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Department of Systems and Computer Science, Howard University, Washington, DC, USA","institution_ids":["https://openalex.org/I137853757"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068264136","display_name":"Legand Burge","orcid":"https://orcid.org/0009-0000-9876-7135"},"institutions":[{"id":"https://openalex.org/I137853757","display_name":"Howard University","ror":"https://ror.org/05gt1vc06","country_code":"US","type":"education","lineage":["https://openalex.org/I137853757"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Legand Burge","raw_affiliation_strings":["Department of Systems and Computer Science, Howard University, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Department of Systems and Computer Science, Howard University, Washington, DC, USA","institution_ids":["https://openalex.org/I137853757"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042203775","display_name":"William M. Southerland","orcid":null},"institutions":[{"id":"https://openalex.org/I137853757","display_name":"Howard University","ror":"https://ror.org/05gt1vc06","country_code":"US","type":"education","lineage":["https://openalex.org/I137853757"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Southerland","raw_affiliation_strings":["Department of Biochemistry, Howard University, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Howard University, Washington, DC, USA","institution_ids":["https://openalex.org/I137853757"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5051035661"],"corresponding_institution_ids":["https://openalex.org/I137853757"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12060989,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"19","issue":null,"first_page":"540","last_page":"543"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.76422119140625},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7538291215896606},{"id":"https://openalex.org/keywords/dihedral-angle","display_name":"Dihedral angle","score":0.7326362729072571},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6027958989143372},{"id":"https://openalex.org/keywords/information-visualization","display_name":"Information visualization","score":0.5393277406692505},{"id":"https://openalex.org/keywords/index","display_name":"Index (typography)","score":0.5193834900856018},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.5101628303527832},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.501232385635376},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4686664342880249},{"id":"https://openalex.org/keywords/spatial-database","display_name":"Spatial database","score":0.4191626012325287},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3418511152267456},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1695273518562317},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10594692826271057},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.07867419719696045}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.76422119140625},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7538291215896606},{"id":"https://openalex.org/C89025888","wikidata":"https://www.wikidata.org/wiki/Q911907","display_name":"Dihedral angle","level":4,"score":0.7326362729072571},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6027958989143372},{"id":"https://openalex.org/C185578843","wikidata":"https://www.wikidata.org/wiki/Q10609775","display_name":"Information visualization","level":3,"score":0.5393277406692505},{"id":"https://openalex.org/C2777382242","wikidata":"https://www.wikidata.org/wiki/Q6017816","display_name":"Index (typography)","level":2,"score":0.5193834900856018},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.5101628303527832},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.501232385635376},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4686664342880249},{"id":"https://openalex.org/C203689450","wikidata":"https://www.wikidata.org/wiki/Q2302053","display_name":"Spatial database","level":3,"score":0.4191626012325287},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3418511152267456},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1695273518562317},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10594692826271057},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.07867419719696045},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.0},{"id":"https://openalex.org/C112887158","wikidata":"https://www.wikidata.org/wiki/Q169324","display_name":"Hydrogen bond","level":3,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2012.6470197","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2012.6470197","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1984493861","https://openalex.org/W2095515048","https://openalex.org/W2102898692","https://openalex.org/W2106612397","https://openalex.org/W2116398954","https://openalex.org/W2165186407","https://openalex.org/W2917431650","https://openalex.org/W4233334497","https://openalex.org/W4233983422","https://openalex.org/W4236956086"],"related_works":["https://openalex.org/W4251016002","https://openalex.org/W2122098189","https://openalex.org/W2019468830","https://openalex.org/W2358133679","https://openalex.org/W186585275","https://openalex.org/W2359471660","https://openalex.org/W2377819299","https://openalex.org/W2350384810","https://openalex.org/W2547353776","https://openalex.org/W1983673890"],"abstract_inverted_index":{"The":[0],"generation":[1],"of":[2,12,49,66,70],"protein":[3,34,52],"data":[4],"is":[5,16],"increasing":[6],"exponentially":[7],"with":[8],"the":[9,33,46,55,64,67,71],"rapid":[10],"development":[11],"experimental":[13],"technology.":[14],"It":[15],"becoming":[17],"a":[18,41,50],"major":[19],"issue":[20],"for":[21,29],"bioinformatics":[22],"scientists":[23],"to":[24,53],"find":[25],"an":[26],"efficient":[27],"method":[28],"retrieving":[30],"and":[31],"visualizing":[32],"structures.":[35],"In":[36],"this":[37],"paper,":[38],"we":[39,62],"present":[40],"novel":[42],"approach":[43],"that":[44],"uses":[45],"dihedral":[47,68],"information":[48,69],"specific":[51],"query":[54],"spatial":[56],"structures":[57],"from":[58],"public":[59],"databases.":[60],"Furthermore,":[61],"implemented":[63],"visualization":[65],"queried":[72],"database.":[73]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
