{"id":"https://openalex.org/W2001088604","doi":"https://doi.org/10.1109/bibmw.2011.6112531","title":"Integration of polygenic and individual SNP effects in genome-wide association analyses","display_name":"Integration of polygenic and individual SNP effects in genome-wide association analyses","publication_year":2011,"publication_date":"2011-11-01","ids":{"openalex":"https://openalex.org/W2001088604","doi":"https://doi.org/10.1109/bibmw.2011.6112531","mag":"2001088604"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2011.6112531","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112531","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008909818","display_name":"Nick V. L. Ser\u00e3o","orcid":"https://orcid.org/0000-0002-6758-208X"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"N. V. L. Serao","raw_affiliation_strings":["Department of Animal Sciences, University of Illinois, Urbana-Champaign, Urbana, USA","Department of Animal Sciences, University of Illinois at Urbana Champaign, Urbana, USA"],"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences, University of Illinois, Urbana-Champaign, Urbana, USA","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Department of Animal Sciences, University of Illinois at Urbana Champaign, Urbana, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013214343","display_name":"Jonathan E. Beever","orcid":"https://orcid.org/0000-0001-6156-0632"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. E. Beever","raw_affiliation_strings":["Department of Animal Sciences, University of Illinois, Urbana-Champaign, Urbana, USA","Department of Animal Sciences, University of Illinois at Urbana Champaign, Urbana, USA"],"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences, University of Illinois, Urbana-Champaign, Urbana, USA","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Department of Animal Sciences, University of Illinois at Urbana Champaign, Urbana, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051167241","display_name":"D.B. Faulkner","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. B. Faulkner","raw_affiliation_strings":["Department of Animal Sciences, University of Illinois, Urbana-Champaign, Urbana, USA","Department of Animal Sciences, University of Illinois at Urbana Champaign, Urbana, USA"],"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences, University of Illinois, Urbana-Champaign, Urbana, USA","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Department of Animal Sciences, University of Illinois at Urbana Champaign, Urbana, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058590776","display_name":"Sandra L. Rodriguez\u2010Zas","orcid":"https://orcid.org/0000-0003-1122-4758"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. L. Rodriguez-Zas","raw_affiliation_strings":["Department of Animal Sciences, University of Illinois, Urbana-Champaign, Urbana, USA","Department of Animal Sciences, University of Illinois at Urbana Champaign, Urbana, USA"],"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences, University of Illinois, Urbana-Champaign, Urbana, USA","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Department of Animal Sciences, University of Illinois at Urbana Champaign, Urbana, USA","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5008909818"],"corresponding_institution_ids":["https://openalex.org/I157725225"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.08654365,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"22","issue":null,"first_page":"985","last_page":"987"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.7986693382263184},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.7119860649108887},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.700812041759491},{"id":"https://openalex.org/keywords/linkage-disequilibrium","display_name":"Linkage disequilibrium","score":0.7001497745513916},{"id":"https://openalex.org/keywords/genetic-association","display_name":"Genetic association","score":0.565095067024231},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5611816644668579},{"id":"https://openalex.org/keywords/polygene","display_name":"Polygene","score":0.5394488573074341},{"id":"https://openalex.org/keywords/quantitative-trait-locus","display_name":"Quantitative trait locus","score":0.5314300060272217},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.4433034062385559},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2594379186630249},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.23645925521850586}],"concepts":[{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.7986693382263184},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.7119860649108887},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.700812041759491},{"id":"https://openalex.org/C35605836","wikidata":"https://www.wikidata.org/wiki/Q2064311","display_name":"Linkage disequilibrium","level":5,"score":0.7001497745513916},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.565095067024231},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5611816644668579},{"id":"https://openalex.org/C84799019","wikidata":"https://www.wikidata.org/wiki/Q426365","display_name":"Polygene","level":4,"score":0.5394488573074341},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.5314300060272217},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.4433034062385559},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2594379186630249},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.23645925521850586}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2011.6112531","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112531","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W71047797","https://openalex.org/W1968549286","https://openalex.org/W2011353757","https://openalex.org/W2029254935","https://openalex.org/W2047524069","https://openalex.org/W2049576864","https://openalex.org/W2055023166","https://openalex.org/W2059878836","https://openalex.org/W2084921756","https://openalex.org/W2092287543","https://openalex.org/W2122732537","https://openalex.org/W2912488944","https://openalex.org/W6758313484"],"related_works":["https://openalex.org/W2187968078","https://openalex.org/W1523912222","https://openalex.org/W2594299395","https://openalex.org/W1480804049","https://openalex.org/W2066467839","https://openalex.org/W2111842731","https://openalex.org/W2170506381","https://openalex.org/W2765794416","https://openalex.org/W2039666944","https://openalex.org/W1531630856"],"abstract_inverted_index":{"The":[0,23,43,94,144],"lack":[1],"of":[2,4,25,52,100,102,116,125,147,161,236,248],"consideration":[3],"polygenic":[5,41,92,121,141,157,195,223],"effects":[6,99,115,158,224],"in":[7,16,159,179,183,188,225,239,251],"genome-wide":[8],"association":[9],"studies":[10],"(GWAS)":[11],"may":[12,242],"bias":[13],"the":[14,53,90,97,113,136,151,194,216,233,246],"results":[15,214,230],"complex":[17,44,226],"traits":[18,163],"controlled":[19],"by":[20,150,245],"multiple":[21],"genes.":[22],"goal":[24],"this":[26],"study":[27],"is":[28],"to":[29,166,170,218],"develop":[30],"a":[31],"composite-GWAS":[32,220],"model":[33,95,137,153],"that":[34,155,221,232],"identifies":[35],"individual":[36],"SNPs":[37,68,129,148,174],"while":[38],"adjusting":[39],"for":[40],"effects.":[42],"trait":[45],"residual":[46],"feed":[47,54,237],"intake":[48],"(RFI),":[49],"an":[50],"indicator":[51],"efficiency":[55,238],"based":[56],"on":[57],"maintenance":[58],"and":[59,64,73,81,88,106,110,112,119,127,139,186,203],"growth,":[60],"was":[61],"modeled.":[62],"RFI":[63],"genotypic":[65],"data":[66],"(5,910":[67],"from":[69,75,78,200,205],"chromosomes":[70,180],"3,":[71,181],"11":[72,185,206],"24)":[74],"1,387":[76],"steers":[77],"different":[79,83],"breeds":[80],"receiving":[82],"diets":[84],"were":[85,130,191],"analyzed,":[86],"with":[87,135],"without":[89],"additive":[91,120],"effect.":[93,122],"included":[96],"fixed":[98],"days":[101],"feed,":[103],"diet,":[104],"breed":[105],"interaction":[107],"between":[108],"diet":[109],"breed,":[111],"random":[114],"contemporary":[117],"group":[118],"A":[123],"total":[124],"69":[126],"141":[128],"detected":[131,192],"(P-value":[132,175],"<;":[133,176],"0.01)":[134],"including":[138],"excluding":[140],"effects,":[142],"respectively.":[143],"higher":[145],"number":[146],"identified":[149],"second":[152],"confirms":[154],"ignoring":[156],"GWAS":[160],"multi-gene":[162,227],"can":[164],"lead":[165],"false":[167],"positives":[168],"due":[169],"linkage":[171],"disequilibrium.":[172],"Seven":[173],"0.001),":[177],"four":[178],"two":[182],"chromosome":[184,189,201],"one":[187,199,204],"24,":[190],"using":[193],"model.":[196],"Two":[197],"SNPs,":[198],"3":[202],"are":[207],"located":[208],"within":[209],"coding":[210],"gene":[211],"regions.":[212],"Our":[213],"demonstrate":[215],"need":[217],"use":[219],"include":[222],"traits.":[228],"These":[229],"indicated":[231],"genetic":[234],"improvement":[235],"beef":[240],"cattle":[241],"be":[243],"accelerated":[244],"incorporation":[247],"these":[249],"markers":[250],"genomic":[252],"selection":[253],"strategies.":[254]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
