{"id":"https://openalex.org/W2078395016","doi":"https://doi.org/10.1109/bibmw.2011.6112509","title":"Joint analysis of host and pathogen genomes","display_name":"Joint analysis of host and pathogen genomes","publication_year":2011,"publication_date":"2011-11-01","ids":{"openalex":"https://openalex.org/W2078395016","doi":"https://doi.org/10.1109/bibmw.2011.6112509","mag":"2078395016"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2011.6112509","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112509","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069485745","display_name":"Istv\u00e1n Bartha","orcid":"https://orcid.org/0000-0003-3360-1999"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH","HU"],"is_corresponding":true,"raw_author_name":"I. Bartha","raw_affiliation_strings":["Institute of Biology, E\u00f6tv\u00f6s Lonr\u00e1nd University, Budapest, Hungary","Institute of Microbiology, Univ of Lausanne, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Biology, E\u00f6tv\u00f6s Lonr\u00e1nd University, Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]},{"raw_affiliation_string":"Institute of Microbiology, Univ of Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066398751","display_name":"Amalio Telenti","orcid":"https://orcid.org/0000-0001-6290-7677"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"A. Telenti","raw_affiliation_strings":["Institute of Microbiology, Univ of Lausanne, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Microbiology, Univ of Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083530338","display_name":"Veronika M\u00fcller","orcid":"https://orcid.org/0000-0002-1398-3187"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"V. Muller","raw_affiliation_strings":["Institute of Biology, E\u00f6tv\u00f6s Lonr\u00e1nd University, Budapest, Hungary"],"affiliations":[{"raw_affiliation_string":"Institute of Biology, E\u00f6tv\u00f6s Lonr\u00e1nd University, Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089009771","display_name":"Jacques Fellay","orcid":"https://orcid.org/0000-0002-8240-939X"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"J. Fellay","raw_affiliation_strings":["\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5069485745"],"corresponding_institution_ids":["https://openalex.org/I106118109","https://openalex.org/I97565354"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09654757,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"935","last_page":"935"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11660","display_name":"Blood groups and transfusion","score":0.9488999843597412,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7059363126754761},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6266921758651733},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5610786080360413},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.5468153953552246},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.4349867105484009},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.429610013961792},{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.41336894035339355},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.3019595742225647},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2326968014240265},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.16626155376434326}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7059363126754761},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6266921758651733},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5610786080360413},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5468153953552246},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.4349867105484009},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.429610013961792},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.41336894035339355},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.3019595742225647},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2326968014240265},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.16626155376434326}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibmw.2011.6112509","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112509","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},{"id":"pmh:oai:iris.unil.ch:iris/139402","is_oa":false,"landing_page_url":"https://iris.unil.ch/handle/iris/139402","pdf_url":null,"source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference paper"},{"id":"pmh:oai:serval.unil.ch:BIB_7D7B148DB0CF","is_oa":false,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_7D7B148DB0CF","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"inproceedings"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1997352593","https://openalex.org/W2143489661","https://openalex.org/W3016573916","https://openalex.org/W4281711902","https://openalex.org/W3206555169","https://openalex.org/W2070581548","https://openalex.org/W3157359833","https://openalex.org/W2413660786","https://openalex.org/W3024317680","https://openalex.org/W1511048503"],"abstract_inverted_index":{"Joint":[0],"analysis":[1],"of":[2,26],"existing":[3],"host":[4],"genetic":[5,36],"and":[6,18,34],"HIV":[7,35],"sequencing":[8],"data":[9],"has":[10],"been":[11],"limited":[12],"so":[13],"far":[14],"to":[15],"HLA":[16],"alleles":[17],"viral":[19,41],"mutations.":[20],"We":[21],"performed":[22],"a":[23],"genome-wide":[24],"survey":[25],"associations":[27],"between":[28],"human":[29],"single":[30],"nucletide":[31],"polymorphisms":[32],"(SNP)":[33],"variation":[37],"across":[38],"the":[39],"whole":[40],"genome.":[42]},"counts_by_year":[],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}
