{"id":"https://openalex.org/W1997926300","doi":"https://doi.org/10.1109/bibmw.2011.6112507","title":"Implications of observation-fact modifiers to i2b2 ontologies","display_name":"Implications of observation-fact modifiers to i2b2 ontologies","publication_year":2011,"publication_date":"2011-11-01","ids":{"openalex":"https://openalex.org/W1997926300","doi":"https://doi.org/10.1109/bibmw.2011.6112507","mag":"1997926300"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2011.6112507","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112507","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020285377","display_name":"Jack London","orcid":"https://orcid.org/0000-0001-5252-412X"},"institutions":[{"id":"https://openalex.org/I4210106595","display_name":"Sidney Kimmel Cancer Center","ror":"https://ror.org/010h6g454","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210106595"]},{"id":"https://openalex.org/I149251103","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41","country_code":"US","type":"education","lineage":["https://openalex.org/I149251103"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. W. London","raw_affiliation_strings":["Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA, USA","Kimmel Cancer Center, Thomas Jefferson University, Philadelphia PA"],"affiliations":[{"raw_affiliation_string":"Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I149251103","https://openalex.org/I4210106595"]},{"raw_affiliation_string":"Kimmel Cancer Center, Thomas Jefferson University, Philadelphia PA","institution_ids":["https://openalex.org/I149251103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074982703","display_name":"Devjani Chatterjee","orcid":null},"institutions":[{"id":"https://openalex.org/I149251103","display_name":"Thomas Jefferson University","ror":"https://ror.org/00ysqcn41","country_code":"US","type":"education","lineage":["https://openalex.org/I149251103"]},{"id":"https://openalex.org/I4210106595","display_name":"Sidney Kimmel Cancer Center","ror":"https://ror.org/010h6g454","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210106595"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Chatterjee","raw_affiliation_strings":["Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA, USA","Kimmel Cancer Center, Thomas Jefferson University, Philadelphia PA"],"affiliations":[{"raw_affiliation_string":"Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I149251103","https://openalex.org/I4210106595"]},{"raw_affiliation_string":"Kimmel Cancer Center, Thomas Jefferson University, Philadelphia PA","institution_ids":["https://openalex.org/I149251103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5020285377"],"corresponding_institution_ids":["https://openalex.org/I149251103","https://openalex.org/I4210106595"],"apc_list":null,"apc_paid":null,"fwci":0.2668,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.57725395,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"929","last_page":"930"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.6526129245758057},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5770233869552612},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.575612485408783},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.47414013743400574},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4422786831855774},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4179506301879883},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3230932950973511},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17090073227882385},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10094115138053894},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.08575999736785889}],"concepts":[{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.6526129245758057},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5770233869552612},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.575612485408783},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.47414013743400574},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4422786831855774},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4179506301879883},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3230932950973511},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17090073227882385},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10094115138053894},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.08575999736785889},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibmw.2011.6112507","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112507","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},{"id":"pmh:oai:jdc.jefferson.edu:kimmelccfp-1014","is_oa":false,"landing_page_url":"https://jdc.jefferson.edu/kimmelccfp/15","pdf_url":null,"source":{"id":"https://openalex.org/S4210178181","display_name":"The Medicine Forum","issn_l":"2325-2863","issn":["2325-2863"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kimmel Cancer Center Faculty Papers","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W2104608657"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W2804669904","https://openalex.org/W2149777447","https://openalex.org/W2347456287","https://openalex.org/W2121651557","https://openalex.org/W2782969047","https://openalex.org/W4401210459"],"abstract_inverted_index":{"Biomedical":[0],"translational":[1],"research":[2,10,30],"can":[3],"be":[4],"facilitated":[5],"by":[6,22,90],"integrating":[7,35],"clinical":[8,27],"and":[9,17,29,37,120,131],"data.":[11,74],"In":[12],"particular,":[13],"study":[14],"cohort":[15],"identification":[16],"hypothesis":[18],"generation":[19],"is":[20,44,64],"enabled":[21],"the":[23,38,77,82,85,91,104,107,114,123],"mining":[24],"of":[25,73,84,125],"integrated":[26],"observations":[28,105],"resources.":[31],"The":[32,52],"\"informatics":[33],"for":[34,47,69],"biology":[36],"bedside,":[39],"\"":[40],"or":[41],"i2b2,":[42],"framework":[43],"widely":[45],"used":[46],"this":[48],"biomedical":[49],"data":[50,56],"mining.":[51],"i2b2":[53,80,126],"\"star":[54],"schema\"":[55],"model":[57],"using":[58],"entity-attribute-value":[59],"(EA":[60],"V)":[61],"formatted":[62],"concepts":[63],"a":[65],"very":[66],"efficient":[67],"strategy":[68],"querying":[70],"large":[71],"amounts":[72],"However,":[75],"until":[76],"most":[78],"recent":[79],"release,":[81],"utility":[83],"platform":[86],"was":[87],"somewhat":[88],"constrained":[89],"limitations":[92],"on":[93],"being":[94],"able":[95],"to":[96,129],"express":[97],"\"facts":[98],"about":[99,106],"facts\"":[100],"-":[101],"i.e.,":[102],"modify":[103],"patients.":[108],"We":[109],"have":[110],"found":[111],"that":[112],"exploiting":[113],"new":[115],"modifier":[116],"functionality":[117],"has":[118],"significantly":[119],"favorably":[121],"impacted":[122],"design":[124],"ontologies,":[127],"leading":[128],"easier":[130],"more":[132],"meaningful":[133],"query":[134],"results.":[135]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}