{"id":"https://openalex.org/W2088262933","doi":"https://doi.org/10.1109/bibmw.2011.6112500","title":"Medicago truncatula gene regulatory network prediction server","display_name":"Medicago truncatula gene regulatory network prediction server","publication_year":2011,"publication_date":"2011-11-01","ids":{"openalex":"https://openalex.org/W2088262933","doi":"https://doi.org/10.1109/bibmw.2011.6112500","mag":"2088262933"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2011.6112500","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112500","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100769000","display_name":"Mingyi Wang","orcid":"https://orcid.org/0000-0002-0784-296X"},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mingyi Wang","raw_affiliation_strings":["Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, OK, USA","Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, Oklahoma, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, OK, USA","institution_ids":["https://openalex.org/I4210126540"]},{"raw_affiliation_string":"Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, Oklahoma, USA","institution_ids":["https://openalex.org/I4210126540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100877351","display_name":"Yinbeing Ge","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yinbeing Ge","raw_affiliation_strings":["Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, OK, USA","Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, Oklahoma, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, OK, USA","institution_ids":["https://openalex.org/I4210126540"]},{"raw_affiliation_string":"Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, Oklahoma, USA","institution_ids":["https://openalex.org/I4210126540"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109255751","display_name":"Ji He","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ji He","raw_affiliation_strings":["Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, OK, USA","Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, Oklahoma, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, OK, USA","institution_ids":["https://openalex.org/I4210126540"]},{"raw_affiliation_string":"Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, Oklahoma, USA","institution_ids":["https://openalex.org/I4210126540"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210126540"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"912","last_page":"914"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12115","display_name":"Genetic and Environmental Crop Studies","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12571","display_name":"Soybean genetics and cultivation","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/medicago-truncatula","display_name":"Medicago truncatula","score":0.9562937021255493},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7315458059310913},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5449416637420654},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5389907956123352},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47651374340057373},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4573572874069214},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22231987118721008}],"concepts":[{"id":"https://openalex.org/C2778339097","wikidata":"https://www.wikidata.org/wiki/Q136894","display_name":"Medicago truncatula","level":4,"score":0.9562937021255493},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7315458059310913},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5449416637420654},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5389907956123352},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47651374340057373},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4573572874069214},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22231987118721008},{"id":"https://openalex.org/C43144210","wikidata":"https://www.wikidata.org/wiki/Q121610","display_name":"Symbiosis","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2011.6112500","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112500","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310627","display_name":"Oklahoma Center for the Advancement of Science and Technology","ror":"https://ror.org/02q578v20"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1965064481","https://openalex.org/W1969739519","https://openalex.org/W1979178971","https://openalex.org/W2012025658","https://openalex.org/W2014978570","https://openalex.org/W2056327301","https://openalex.org/W2059680574","https://openalex.org/W2098830771","https://openalex.org/W2117994680","https://openalex.org/W2124331928","https://openalex.org/W2128101402","https://openalex.org/W2136026832","https://openalex.org/W2150646520","https://openalex.org/W2152482800","https://openalex.org/W2155205047","https://openalex.org/W2155263871","https://openalex.org/W2159171298","https://openalex.org/W2162142896","https://openalex.org/W2163296115","https://openalex.org/W2169950095","https://openalex.org/W3099289621"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Medicago":[0,58,76],"truncatula,":[1],"a":[2,48,120,128,137,198],"model":[3],"legume":[4,20,46,69],"species,":[5],"plays":[6],"an":[7,32],"important":[8],"role":[9],"for":[10,52,109,159,173,208],"study":[11],"of":[12,26,35,39,68,176,213],"gene":[13,59,146],"regulatory":[14,60],"mechanisms":[15],"that":[16,63],"are":[17],"specific":[18],"to":[19,43,96,123,127,144,156],"biology,":[21],"such":[22],"as":[23,148,150],"the":[24,45,75,116,151,174,195],"process":[25],"symbiotic":[27],"nitrogen":[28],"fixation":[29],"which":[30,133,188],"is":[31,42,134],"unique":[33],"function":[34],"legumes.":[36],"The":[37],"aim":[38],"this":[40,73],"project":[41],"provide":[44],"community":[47],"web-based":[49,199],"computational":[50],"service":[51],"predicting":[53],"and":[54,89,101,107,154,181,201,211],"testing":[55],"hypotheses":[56],"on":[57],"networks":[61],"(GRNs)":[62],"govern":[64],"various":[65],"biological":[66],"processes":[67],"crops.":[70],"To":[71],"achieve":[72],"goal,":[74],"microarray":[77],"data":[78],"sets":[79],"have":[80],"been":[81],"collected":[82],"from":[83],"our":[84,190],"internal":[85],"research":[86],"groups,":[87],"collaborators":[88],"public":[90,110],"databases.":[91],"Then,":[92],"three":[93],"GRNs":[94,214],"related":[95],"nodule":[97],"development,":[98],"seed":[99],"development":[100],"nod":[102],"factor":[103],"responses":[104],"were":[105],"predicted":[106],"populated":[108],"access.":[111],"Besides":[112],"these":[113],"statistic":[114],"data,":[115],"web":[117],"server":[118],"provides":[119],"user-friendly":[121],"interface":[122],"allow":[124],"users'":[125,209],"access":[126],"personalized":[129],"GRN":[130,160],"prediction":[131],"pipeline":[132],"backed":[135],"with":[136],"job":[138],"scheduler.":[139],"Users":[140],"would":[141],"be":[142,157,206],"able":[143],"customize":[145],"list,":[147],"well":[149],"different":[152],"algorithms":[153,164],"parameters":[155],"used":[158],"prediction.":[161],"Current":[162],"implemented":[163,207],"include":[165],"co-expression,":[166],"Graphical":[167],"Gaussian":[168],"Models,":[169],"Bayesian":[170],"networks,":[171],"Algorithm":[172],"Reconstruction":[175],"Accurate":[177],"Cellular":[178],"Networks":[179],"(ARACNE)":[180],"Low-order":[182],"constraint":[183],"based":[184],"PC":[185],"algorithm":[186],"(LPC)":[187],"was":[189],"published":[191],"novel":[192],"algorithm.":[193],"In":[194],"near":[196],"future,":[197],"visualization":[200],"interactive":[202],"interpretation":[203],"component":[204],"will":[205],"navigation":[210],"annotation":[212],"intuitively.":[215]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
