{"id":"https://openalex.org/W2023670937","doi":"https://doi.org/10.1109/bibmw.2011.6112431","title":"Towards an environment for data mining based analysis processes in bioinformatics &amp; personalized medicine","display_name":"Towards an environment for data mining based analysis processes in bioinformatics &amp; personalized medicine","publication_year":2011,"publication_date":"2011-11-01","ids":{"openalex":"https://openalex.org/W2023670937","doi":"https://doi.org/10.1109/bibmw.2011.6112431","mag":"2023670937"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2011.6112431","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112431","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://publica.fraunhofer.de/documents/N-192674.html","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009621124","display_name":"Dennis Wegener","orcid":"https://orcid.org/0009-0009-8678-2093"},"institutions":[{"id":"https://openalex.org/I4210144576","display_name":"Fraunhofer Institute for Intelligent Analysis and Information Systems","ror":"https://ror.org/04nc32781","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210144576","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Dennis Wegener","raw_affiliation_strings":["Fraunhofer IAIS, Schloss Birlinghoven, 53754 Sankt Augustin, Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer IAIS, Schloss Birlinghoven, 53754 Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210144576"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006023626","display_name":"Simona Rossi","orcid":"https://orcid.org/0000-0001-5038-0767"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Simona Rossi","raw_affiliation_strings":["Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland","Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075865182","display_name":"Francesca M. Buffa","orcid":"https://orcid.org/0000-0003-0409-406X"},"institutions":[{"id":"https://openalex.org/I2802742124","display_name":"John Radcliffe Hospital","ror":"https://ror.org/0080acb59","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802742124","https://openalex.org/I4210127145","https://openalex.org/I4210147381"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Francesca Buffa","raw_affiliation_strings":["Weatherall Institute of Molecular Medicine, University of Oxford John Radcliffe Hospital, Headington, Oxford OX3 9DS, United Kingdom","Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Headington, Oxford, OX3 9DS, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Weatherall Institute of Molecular Medicine, University of Oxford John Radcliffe Hospital, Headington, Oxford OX3 9DS, United Kingdom","institution_ids":["https://openalex.org/I2802742124","https://openalex.org/I40120149"]},{"raw_affiliation_string":"Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Headington, Oxford, OX3 9DS, United Kingdom","institution_ids":["https://openalex.org/I2802742124","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078722669","display_name":"Mauro Delorenzi","orcid":"https://orcid.org/0000-0001-7631-3263"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Mauro Delorenzi","raw_affiliation_strings":["Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland","Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090338473","display_name":"Stefan Riiping","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144576","display_name":"Fraunhofer Institute for Intelligent Analysis and Information Systems","ror":"https://ror.org/04nc32781","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210144576","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Riiping","raw_affiliation_strings":["Fraunhofer IAIS, Schloss Birlinghoven, 53754 Sankt Augustin, Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer IAIS, Schloss Birlinghoven, 53754 Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210144576"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5009621124"],"corresponding_institution_ids":["https://openalex.org/I4210144576"],"apc_list":null,"apc_paid":null,"fwci":0.2606,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.57117957,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"5","issue":null,"first_page":"570","last_page":"577"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/translational-bioinformatics","display_name":"Translational bioinformatics","score":0.8408000469207764},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.7220675349235535},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.5825756788253784},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5789334177970886},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.5763251781463623},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5549222826957703},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5476469397544861},{"id":"https://openalex.org/keywords/translational-research-informatics","display_name":"Translational research informatics","score":0.5331446528434753},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.42891281843185425},{"id":"https://openalex.org/keywords/clinical-practice","display_name":"Clinical Practice","score":0.42412105202674866},{"id":"https://openalex.org/keywords/clinical-decision-support-system","display_name":"Clinical decision support system","score":0.4104020297527313},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.38721978664398193},{"id":"https://openalex.org/keywords/decision-support-system","display_name":"Decision support system","score":0.3557233214378357},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.28451621532440186},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24851638078689575},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.21956178545951843},{"id":"https://openalex.org/keywords/health-administration-informatics","display_name":"Health Administration Informatics","score":0.1867195963859558},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.170671284198761},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.0949571430683136}],"concepts":[{"id":"https://openalex.org/C163293594","wikidata":"https://www.wikidata.org/wiki/Q7834541","display_name":"Translational bioinformatics","level":5,"score":0.8408000469207764},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.7220675349235535},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.5825756788253784},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5789334177970886},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.5763251781463623},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5549222826957703},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5476469397544861},{"id":"https://openalex.org/C73851307","wikidata":"https://www.wikidata.org/wiki/Q7834546","display_name":"Translational research informatics","level":5,"score":0.5331446528434753},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.42891281843185425},{"id":"https://openalex.org/C2779974597","wikidata":"https://www.wikidata.org/wiki/Q28448986","display_name":"Clinical Practice","level":2,"score":0.42412105202674866},{"id":"https://openalex.org/C63527458","wikidata":"https://www.wikidata.org/wiki/Q5133829","display_name":"Clinical decision support system","level":3,"score":0.4104020297527313},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.38721978664398193},{"id":"https://openalex.org/C107327155","wikidata":"https://www.wikidata.org/wiki/Q330268","display_name":"Decision support system","level":2,"score":0.3557233214378357},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.28451621532440186},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24851638078689575},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.21956178545951843},{"id":"https://openalex.org/C141363852","wikidata":"https://www.wikidata.org/wiki/Q5690441","display_name":"Health Administration Informatics","level":4,"score":0.1867195963859558},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.170671284198761},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0949571430683136},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C512399662","wikidata":"https://www.wikidata.org/wiki/Q3505712","display_name":"Family medicine","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibmw.2011.6112431","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112431","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},{"id":"pmh:oai:fraunhofer.de:N-192674","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-192674.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer IAIS","raw_type":"Conference Paper"},{"id":"pmh:oai:publica.fraunhofer.de:publica/373132","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/373132","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference paper"}],"best_oa_location":{"id":"pmh:oai:fraunhofer.de:N-192674","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-192674.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer IAIS","raw_type":"Conference Paper"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1588488206","https://openalex.org/W1964979998","https://openalex.org/W1986129954","https://openalex.org/W1986613820","https://openalex.org/W1989660002","https://openalex.org/W1996564243","https://openalex.org/W2004104411","https://openalex.org/W2004442803","https://openalex.org/W2005298946","https://openalex.org/W2017426710","https://openalex.org/W2023906705","https://openalex.org/W2035459770","https://openalex.org/W2041971917","https://openalex.org/W2047232802","https://openalex.org/W2059387397","https://openalex.org/W2077066051","https://openalex.org/W2078370799","https://openalex.org/W2096368265","https://openalex.org/W2096791553","https://openalex.org/W2098274352","https://openalex.org/W2104517740","https://openalex.org/W2105882193","https://openalex.org/W2128985829","https://openalex.org/W2137653635","https://openalex.org/W2142595214","https://openalex.org/W2148319892","https://openalex.org/W2160360616","https://openalex.org/W2164085333","https://openalex.org/W2329264843","https://openalex.org/W6684227139"],"related_works":["https://openalex.org/W3082935376","https://openalex.org/W2145770068","https://openalex.org/W4391852341","https://openalex.org/W2122203599","https://openalex.org/W4399651953","https://openalex.org/W2417694478","https://openalex.org/W2046346275","https://openalex.org/W1996084794","https://openalex.org/W4298001029","https://openalex.org/W2126776237"],"abstract_inverted_index":{"Bioinformatics":[0],"and":[1,9,12,19,44,92,102,121],"data":[2,113,126],"mining":[3,114,127],"procedures":[4,13],"are":[5],"collaborating":[6],"to":[7,22,67,79,86],"implement":[8],"evaluate":[10],"tools":[11],"for":[14,112],"prediction":[15],"of":[16,62],"disease":[17],"recurrence":[18],"progression,":[20],"response":[21],"treatment,":[23],"as":[24,26],"well":[25],"new":[27],"insights":[28],"into":[29,39],"various":[30],"oncogenic":[31],"pathways":[32],"[1],":[33],"[2],":[34],"[3],":[35],"[4]":[36],"by":[37,95],"taking":[38],"account":[40],"the":[41,60,81,110,133],"user":[42],"needs":[43],"their":[45],"heterogeneity.":[46],"Based":[47],"on":[48],"these":[49,130],"advances,":[50],"medicine":[51,94],"is":[52,57,74],"undergoing":[53],"a":[54,76,87,125],"revolution":[55],"that":[56],"even":[58],"transforming":[59],"nature":[61],"health":[63],"care":[64],"from":[65,83],"reactive":[66],"proactive":[68],"[5].":[69],"The":[70],"p-medicine":[71,134],"(www.p-medicine.eu)":[72],"consortium":[73],"creating":[75],"biomedical":[77],"platform":[78],"facilitate":[80],"translation":[82],"current":[84],"practice":[85],"predictive,":[88],"personalized,":[89],"preventive,":[90],"participatory":[91],"psycho-cognitive":[93],"integrating":[96],"VPH":[97],"models,":[98],"clinical":[99],"practice,":[100],"imaging":[101],"omics":[103],"data.":[104],"In":[105],"this":[106],"paper,":[107],"we":[108],"present":[109],"challenges":[111],"based":[115],"analysis":[116],"in":[117,132],"bio-and":[118],"medical":[119],"informatics":[120],"our":[122],"approach":[123],"towards":[124],"environment":[128],"addressing":[129],"requirements":[131],"platform.":[135]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
