{"id":"https://openalex.org/W2042083778","doi":"https://doi.org/10.1109/bibmw.2011.6112399","title":"Protein docking with information on evolutionary conserved interfaces","display_name":"Protein docking with information on evolutionary conserved interfaces","publication_year":2011,"publication_date":"2011-11-01","ids":{"openalex":"https://openalex.org/W2042083778","doi":"https://doi.org/10.1109/bibmw.2011.6112399","mag":"2042083778"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2011.6112399","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112399","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062343708","display_name":"Irina Hashmi","orcid":null},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"I. Hashmi","raw_affiliation_strings":["Department of Computer Science, George Mason University, Fairfax, VA, USA","Department of Computer Science George Mason University Fairfax, VA 22030#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]},{"raw_affiliation_string":"Department of Computer Science George Mason University Fairfax, VA 22030#TAB#","institution_ids":["https://openalex.org/I162714631"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064169931","display_name":"Bahar Akbal-Delibas","orcid":"https://orcid.org/0000-0001-6798-9587"},"institutions":[{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]},{"id":"https://openalex.org/I33434090","display_name":"University of Massachusetts Boston","ror":"https://ror.org/04ydmy275","country_code":"US","type":"education","lineage":["https://openalex.org/I33434090"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. Akbal-Delibas","raw_affiliation_strings":["Department of Computer Science, University of Massachusetts, Boston, Boston, MA, USA","Department of Computer Science, University of Massachusetts at Boston, Boston, MA, 02125"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Massachusetts, Boston, Boston, MA, USA","institution_ids":["https://openalex.org/I33434090"]},{"raw_affiliation_string":"Department of Computer Science, University of Massachusetts at Boston, Boston, MA, 02125","institution_ids":["https://openalex.org/I24603500"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053405483","display_name":"Nurit Haspel","orcid":"https://orcid.org/0000-0003-4810-379X"},"institutions":[{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]},{"id":"https://openalex.org/I33434090","display_name":"University of Massachusetts Boston","ror":"https://ror.org/04ydmy275","country_code":"US","type":"education","lineage":["https://openalex.org/I33434090"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N. Haspel","raw_affiliation_strings":["Department of Computer Science, University of Massachusetts, Boston, Boston, MA, USA","Department of Computer Science, University of Massachusetts at Boston, Boston, MA, 02125"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Massachusetts, Boston, Boston, MA, USA","institution_ids":["https://openalex.org/I33434090"]},{"raw_affiliation_string":"Department of Computer Science, University of Massachusetts at Boston, Boston, MA, 02125","institution_ids":["https://openalex.org/I24603500"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044722808","display_name":"Amarda Shehu","orcid":"https://orcid.org/0000-0001-5230-4610"},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Shehu","raw_affiliation_strings":["Department of Computer Science, George Mason University, Fairfax, VA, USA","Department of Computer Science George Mason University Fairfax, VA 22030#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]},{"raw_affiliation_string":"Department of Computer Science George Mason University Fairfax, VA 22030#TAB#","institution_ids":["https://openalex.org/I162714631"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5062343708"],"corresponding_institution_ids":["https://openalex.org/I162714631"],"apc_list":null,"apc_paid":null,"fwci":1.0546,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.75332972,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"71","issue":null,"first_page":"358","last_page":"365"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5926249027252197},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4351400136947632},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4271145761013031},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.41351810097694397},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3898724913597107},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2868209481239319},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1581253707408905},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12616080045700073},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11044773459434509}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5926249027252197},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4351400136947632},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4271145761013031},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.41351810097694397},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3898724913597107},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2868209481239319},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1581253707408905},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12616080045700073},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11044773459434509},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2011.6112399","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112399","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6100000143051147,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1965410913","https://openalex.org/W1968430567","https://openalex.org/W1968922152","https://openalex.org/W1974987674","https://openalex.org/W1982609064","https://openalex.org/W1983036219","https://openalex.org/W1987225526","https://openalex.org/W2005303043","https://openalex.org/W2008067788","https://openalex.org/W2018410079","https://openalex.org/W2019691413","https://openalex.org/W2029667189","https://openalex.org/W2042730255","https://openalex.org/W2045550557","https://openalex.org/W2063831812","https://openalex.org/W2087744067","https://openalex.org/W2090183113","https://openalex.org/W2091734240","https://openalex.org/W2115879729","https://openalex.org/W2129414710","https://openalex.org/W2133712572","https://openalex.org/W2135817448","https://openalex.org/W2137991504","https://openalex.org/W2138333863","https://openalex.org/W2144071905","https://openalex.org/W2150399099","https://openalex.org/W2151460035","https://openalex.org/W2153983456","https://openalex.org/W2154813243","https://openalex.org/W2166298331","https://openalex.org/W2170421654","https://openalex.org/W2171516325","https://openalex.org/W4243603320","https://openalex.org/W4245892713"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4312203868","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W3187431608","https://openalex.org/W1974422922","https://openalex.org/W4309353019"],"abstract_inverted_index":{"Structural":[0],"modeling":[1],"of":[2,9,28,42,48,70,91],"molecular":[3,11],"assemblies":[4,72],"lies":[5],"at":[6],"the":[7,40,44,58,98,106,122],"heart":[8],"understanding":[10],"interactions":[12],"and":[13,24,96],"biological":[14],"function.":[15],"We":[16,83],"present":[17],"a":[18,88],"method":[19,32,86],"for":[20],"docking":[21],"protein":[22,29,71,94],"molecules":[23],"elucidating":[25],"native-like":[26],"structures":[27,99,110],"dimers.":[30],"Our":[31,117],"is":[33,54],"based":[34],"on":[35,87],"geometric":[36],"hashing":[37],"to":[38,101,105,111],"ensure":[39],"feasibility":[41],"searching":[43],"combined":[45],"conformational":[46],"space":[47,53],"dimeric":[49,109],"structures.":[50],"The":[51],"search":[52,123],"narrowed":[55],"by":[56,114],"focusing":[57,121],"sought":[59],"rigid-body":[60],"transformations":[61],"around":[62,124],"surface":[63],"areas":[64],"with":[65],"evolutionary-conserved":[66,125],"amino-acids.":[67],"Recent":[68],"analysis":[69],"reveals":[73],"that":[74,120],"many":[75],"functional":[76],"interfaces":[77,126],"are":[78],"significantly":[79],"conserved":[80],"throughout":[81],"evolution.":[82],"test":[84],"our":[85],"broad":[89],"list":[90],"sixteen":[92],"diverse":[93],"dimers":[95],"compare":[97],"found":[100],"have":[102],"lowest":[103],"lRMSD":[104],"known":[107],"native":[108],"those":[112],"reported":[113],"other":[115],"groups.":[116],"results":[118,127],"show":[119],"in":[128],"lower":[129],"lRMSDs.":[130]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
