{"id":"https://openalex.org/W2156853400","doi":"https://doi.org/10.1109/bibmw.2010.5703864","title":"BindSDb: A binding-information spatial database","display_name":"BindSDb: A binding-information spatial database","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2156853400","doi":"https://doi.org/10.1109/bibmw.2010.5703864","mag":"2156853400"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2010.5703864","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2010.5703864","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047763166","display_name":"Damian Roqueiro","orcid":"https://orcid.org/0000-0002-9195-5915"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Damian Roqueiro","raw_affiliation_strings":["Department of Bioengineering, University of Illinois, Chicago, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of Illinois, Chicago, Chicago, USA","institution_ids":["https://openalex.org/I157725225","https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004867663","display_name":"Jonna Frasor","orcid":"https://orcid.org/0000-0002-6003-1867"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonna Frasor","raw_affiliation_strings":["Department of Physiology and Biophysics, University of Illinois, Chicago, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physiology and Biophysics, University of Illinois, Chicago, Chicago, USA","institution_ids":["https://openalex.org/I157725225","https://openalex.org/I39422238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025440962","display_name":"Yang Dai","orcid":"https://orcid.org/0000-0002-7638-849X"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yang Dai","raw_affiliation_strings":["Department of Bioengineering, University of Illinois, Chicago, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of Illinois, Chicago, Chicago, USA","institution_ids":["https://openalex.org/I157725225","https://openalex.org/I39422238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.4914,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.84685384,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"409","issue":null,"first_page":"573","last_page":"578"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11596","display_name":"Constraint Satisfaction and Optimization","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11596","display_name":"Constraint Satisfaction and Optimization","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9746999740600586,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9587000012397766,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.6357830762863159},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5761688947677612},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.5433817505836487},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5338068604469299},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.49226394295692444},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.441182017326355},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.4246559143066406},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4031383693218231},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34054431319236755},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3307320475578308},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30419307947158813},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27009880542755127},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.2346067726612091},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21283167600631714},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09214457869529724}],"concepts":[{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.6357830762863159},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5761688947677612},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.5433817505836487},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5338068604469299},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.49226394295692444},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.441182017326355},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.4246559143066406},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4031383693218231},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34054431319236755},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3307320475578308},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30419307947158813},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27009880542755127},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.2346067726612091},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21283167600631714},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09214457869529724},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2010.5703864","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2010.5703864","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1844476468","https://openalex.org/W1977556410","https://openalex.org/W1988393300","https://openalex.org/W2020336239","https://openalex.org/W2029306088","https://openalex.org/W2035539647","https://openalex.org/W2064879068","https://openalex.org/W2085567045","https://openalex.org/W2094036688","https://openalex.org/W2095718954","https://openalex.org/W2113466606","https://openalex.org/W2130675837","https://openalex.org/W2146368849","https://openalex.org/W2149680578","https://openalex.org/W2153550523","https://openalex.org/W2155340806","https://openalex.org/W2156933633","https://openalex.org/W2166898290","https://openalex.org/W2169318796","https://openalex.org/W2610493035","https://openalex.org/W2916408032","https://openalex.org/W2918025614","https://openalex.org/W6639079545","https://openalex.org/W6674493967","https://openalex.org/W6759413307"],"related_works":["https://openalex.org/W2036927633","https://openalex.org/W2153561273","https://openalex.org/W2152664145","https://openalex.org/W2079197459","https://openalex.org/W2379997263","https://openalex.org/W2067561164","https://openalex.org/W2165899269","https://openalex.org/W2236968607","https://openalex.org/W4233525429","https://openalex.org/W2131580913"],"abstract_inverted_index":{"We":[0],"have":[1],"developed":[2],"a":[3,35],"database":[4,37],"that":[5,38],"stores":[6],"experimental":[7],"binding":[8,14,20,48],"data":[9],"and":[10,18,50],"predicted":[11],"transcription":[12,51],"factor":[13],"sites.":[15],"All":[16],"true":[17],"putative":[19],"sites":[21,49],"are":[22],"stored":[23],"in":[24,34],"conjunction":[25],"with":[26],"the":[27,31,46],"latest":[28],"assembly":[29],"of":[30],"human":[32],"genome":[33],"spatial":[36],"answers":[39],"user-input":[40],"queries":[41],"about":[42],"topological":[43],"relationships":[44],"between":[45],"genes,":[47],"factors.":[52]},"counts_by_year":[{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}